View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_high_37 (Length: 360)

Name: NF0829_high_37
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_high_37
NF0829_high_37
[»] chr6 (18 HSPs)
chr6 (214-360)||(31564697-31564843)
chr6 (69-360)||(33385314-33385595)
chr6 (1-155)||(31564838-31564985)
chr6 (69-360)||(33259583-33259884)
chr6 (69-261)||(33416152-33416345)
chr6 (69-254)||(24631975-24632161)
chr6 (113-295)||(9165228-9165418)
chr6 (2-66)||(33414724-33414788)
chr6 (2-66)||(33293130-33293194)
chr6 (7-68)||(33279079-33279139)
chr6 (2-66)||(33258352-33258416)
chr6 (7-66)||(33395215-33395274)
chr6 (224-298)||(29274300-29274376)
chr6 (20-66)||(28873045-28873091)
chr6 (114-155)||(33282241-33282282)
chr6 (114-155)||(33398042-33398083)
chr6 (114-155)||(33408952-33408993)
chr6 (237-312)||(2034496-2034572)
[»] chr2 (5 HSPs)
chr2 (2-66)||(17447760-17447825)
chr2 (217-298)||(34339039-34339122)
chr2 (225-265)||(3102617-3102657)
chr2 (237-298)||(7103554-7103615)
chr2 (237-298)||(18962109-18962172)
[»] scaffold0428 (5 HSPs)
scaffold0428 (199-360)||(3802-3972)
scaffold0428 (69-155)||(3704-3791)
scaffold0428 (7-68)||(15114-15174)
scaffold0428 (2-66)||(2473-2537)
scaffold0428 (114-155)||(11970-12011)
[»] chr5 (6 HSPs)
chr5 (224-346)||(11684346-11684468)
chr5 (217-298)||(32059660-32059742)
chr5 (300-352)||(30653386-30653438)
chr5 (217-261)||(10391269-10391313)
chr5 (217-256)||(29115328-29115367)
chr5 (225-261)||(19113227-19113263)
[»] chr3 (5 HSPs)
chr3 (217-295)||(38462197-38462277)
chr3 (224-297)||(22232749-22232824)
chr3 (208-290)||(3015928-3016011)
chr3 (225-261)||(16790466-16790502)
chr3 (225-290)||(51278236-51278303)
[»] chr1 (5 HSPs)
chr1 (227-280)||(44207697-44207750)
chr1 (217-273)||(11639512-11639568)
chr1 (301-345)||(30014095-30014139)
chr1 (242-298)||(44422642-44422698)
chr1 (224-256)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (239-312)||(21335-21410)
[»] chr8 (8 HSPs)
chr8 (222-290)||(26717178-26717246)
chr8 (226-312)||(5290566-5290649)
chr8 (217-280)||(26716527-26716590)
chr8 (264-350)||(10079082-10079168)
chr8 (301-350)||(30389108-30389157)
chr8 (224-298)||(34788498-34788574)
chr8 (225-261)||(6918955-6918991)
chr8 (228-295)||(8536123-8536191)
[»] chr7 (8 HSPs)
chr7 (217-298)||(3610811-3610894)
chr7 (225-346)||(26935573-26935696)
chr7 (183-261)||(22388014-22388093)
chr7 (225-290)||(7244626-7244693)
chr7 (217-261)||(23721417-23721461)
chr7 (237-298)||(33894559-33894621)
chr7 (224-297)||(35536030-35536105)
chr7 (225-261)||(45078217-45078253)
[»] chr4 (3 HSPs)
chr4 (226-280)||(32920489-32920543)
chr4 (223-290)||(47970240-47970309)
chr4 (240-310)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 214 - 360
Target Start/End: Complemental strand, 31564843 - 31564697
Alignment:
Q  214 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 313  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  314 ttctagacaacatacggaaataagctgaaaacaacttttgtggacat 360  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacat 31564697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 69 - 360
Target Start/End: Original strand, 33385314 - 33385595
Alignment:
Q  69 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 167  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  168 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 265  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  266 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacat 360  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| |||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacat 33385595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 31564985 - 31564838
Alignment:
Q  1 cgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatgcaagtgttggtgatatagttgctgcaattcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||| |||    
T  31564985 cgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatgtaagtgttggt-------ttgctgcaatccaa 31564893  T
Q  101 aggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    |||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564892 agggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 360
Target Start/End: Original strand, 33259583 - 33259884
Alignment:
Q  69 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 167  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  168 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 265  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  266 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 358  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  359 at 360  Q
    ||    
T  33259883 at 33259884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  69 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 167  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  168 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 261  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 254
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  69 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 167  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  168 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 254  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 295
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  113 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 205  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  206 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 295  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 33414724 - 33414788
Alignment:
Q  2 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 33293130 - 33293194
Alignment:
Q  2 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||    
T  33293130 gtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 33279079 - 33279139
Alignment:
Q  7 ccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 68  Q
    ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279079 ccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 33258352 - 33258416
Alignment:
Q  2 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  33258352 gtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 33395215 - 33395274
Alignment:
Q  7 ccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395215 ccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  224 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  20 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  114 gacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  114 gacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  114 gacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 2034572 - 2034496
Alignment:
Q  237 tgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttcctataagcgattttcataagct 312  Q
    |||||||||||||||| |||||| | ||| |||||||| |||||| |||  |||| |||||||  ||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagct 2034496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 17447825 - 17447760
Alignment:
Q  2 gtcttccggatttcttgtcagcggatgagagaccc-ttttttctgaggtatgcttgcgccttttca 66  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17447825 gtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttatagcaa 265  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  237 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 298  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 18962172 - 18962109
Alignment:
Q  237 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    ||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| |||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc 18962109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 360
Target Start/End: Original strand, 3802 - 3972
Alignment:
Q  199 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttc------ 290  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| ||||||||||||||||||          
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  291 -ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacat 360  Q
     |||||||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| |||||||    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacat 3972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  69 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 15174 - 15114
Alignment:
Q  7 ccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 68  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||    
T  15174 ccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 2473 - 2537
Alignment:
Q  2 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 66  Q
    |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  2473 gtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  114 gacatttaaaaattacaaaccttatgtaagaattcaaagata 155  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  224 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 323  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  324 catacggaaataagctgaaaaca 346  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 298  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 30653438 - 30653386
Alignment:
Q  300 attttcataagcttttctagacaacatacggaaataagctgaaaacaactttt 352  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| |||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagctttt 30653386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctattt 256  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 19113263 - 19113227
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19113263 ttatcatataattgcttatgtataaactatttttata 19113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 295  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  224 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 297  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  208 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 290  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 16790502 - 16790466
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||| || |||||||||||||||||||||||||    
T  16790502 ttatcatataagtgcttatgtataagctatttttata 16790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 51278303 - 51278236
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttatagcaagata--aaatgaagtcatactgttttc 290  Q
    |||||||| ||||||| ||||||||||||||| |||| ||| |||  |||| |||||| |||||||||    
T  51278303 ttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttc 51278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  227 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 280  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 11639568 - 11639512
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaat 273  Q
    |||||||||||||||  || | ||||||| ||||||||||||||  |||||||||||    
T  11639568 ataaacacttatcatgtaagtccttatgtgtaagctatttttatgacaagataaaat 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  301 ttttcataagcttttctagacaacatacggaaataagctgaaaac 345  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 44422642 - 44422698
Alignment:
Q  242 atgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 298  Q
    |||||||||||||||||||| || |||||||| |  ||| ||||||||| |||||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagc 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 50764521 - 50764489
Alignment:
Q  224 cttatcataaaattgcttatgtataagctattt 256  Q
    ||||||||| |||||||||||||||||||||||    
T  50764521 cttatcatacaattgcttatgtataagctattt 50764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  239 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 312  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  222 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 290  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  226 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 312  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 280  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  264 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 350  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  301 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 350  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  224 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 6918955 - 6918991
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||| || |||||||||||||||||||||||||    
T  6918955 ttatcatataagtgcttatgtataagctatttttata 6918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 8536191 - 8536123
Alignment:
Q  228 tcataaaattgcttatgtataagctatttttatagcaagataaaa-tgaagtcatactgttttcctata 295  Q
    ||||| || |||||||||||||||||||| |||| ||| |||||| |||||||| | ||||||| ||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 322  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  323 acatacggaaataagctgaaaaca 346  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  183 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 7244626 - 7244693
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 290  Q
    |||||||| || |||||||||||||||||||| |||| |  |||||||||  |||||| |||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttc 7244693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 23721417 - 23721461
Alignment:
Q  217 ataaacacttatcataaaattgcttatgtataagctatttttata 261  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  23721417 ataaacacttatcatcaaagtgcttatgtataaactatttctata 23721461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 33894559 - 33894621
Alignment:
Q  237 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 298  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||| ||||||||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagc 33894621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 35536030 - 35536105
Alignment:
Q  224 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataag 297  Q
    ||||||||| ||  ||||||||||||||||||| |||| |  |||||||||| |||||| | ||||||| ||||||    
T  35536030 cttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 45078217 - 45078253
Alignment:
Q  225 ttatcataaaattgcttatgtataagctatttttata 261  Q
    |||||||| || |||||||||||||||||||||||||    
T  45078217 ttatcatataagtgcttatgtataagctatttttata 45078253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  226 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 280  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  223 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 290  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  240 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 310  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 590 times since January 2019
Visitors: 6130