View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_high_50 (Length: 323)

Name: NF0829_high_50
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_high_50
NF0829_high_50
[»] chr6 (9 HSPs)
chr6 (214-323)||(32260147-32260257)
chr6 (52-173)||(29374980-29375102)
chr6 (118-173)||(19237607-19237662)
chr6 (136-173)||(8683878-8683915)
chr6 (118-170)||(17280703-17280755)
chr6 (104-173)||(17279893-17279963)
chr6 (118-173)||(10793583-10793638)
chr6 (136-173)||(5860559-5860596)
chr6 (118-173)||(7001777-7001832)
[»] chr1 (8 HSPs)
chr1 (217-319)||(49569849-49569951)
chr1 (52-173)||(16801982-16802104)
chr1 (53-173)||(16802620-16802741)
chr1 (122-173)||(17239414-17239465)
chr1 (118-173)||(42026905-42026960)
chr1 (118-173)||(42031697-42031752)
chr1 (123-173)||(17238606-17238656)
chr1 (118-173)||(34267985-34268040)
[»] chr8 (13 HSPs)
chr8 (217-291)||(9045002-9045076)
chr8 (118-173)||(16106028-16106083)
chr8 (118-173)||(16113268-16113323)
chr8 (118-173)||(16101532-16101587)
chr8 (118-173)||(30971294-30971349)
chr8 (122-173)||(5152461-5152512)
chr8 (122-173)||(30972014-30972065)
chr8 (124-173)||(12836707-12836756)
chr8 (124-173)||(42757615-42757664)
chr8 (134-173)||(1274127-1274166)
chr8 (104-173)||(23220017-23220087)
chr8 (214-254)||(20104363-20104403)
chr8 (106-173)||(42758394-42758462)
[»] chr7 (13 HSPs)
chr7 (118-173)||(5997615-5997670)
chr7 (118-173)||(1409385-1409440)
chr7 (118-173)||(27268246-27268301)
chr7 (124-173)||(38887340-38887389)
chr7 (106-173)||(41970897-41970965)
chr7 (122-173)||(5995262-5995313)
chr7 (106-173)||(45551007-45551075)
chr7 (106-173)||(45551796-45551864)
chr7 (118-173)||(27258111-27258167)
chr7 (138-173)||(28778123-28778158)
chr7 (52-85)||(27258046-27258079)
chr7 (52-85)||(27268178-27268211)
chr7 (127-160)||(27875955-27875988)
[»] scaffold0015 (1 HSPs)
scaffold0015 (119-173)||(45342-45396)
[»] chr4 (17 HSPs)
chr4 (118-173)||(31914532-31914587)
chr4 (103-173)||(48314376-48314447)
chr4 (120-173)||(31689186-31689239)
chr4 (106-173)||(23088285-23088353)
chr4 (106-173)||(23089261-23089329)
chr4 (118-173)||(12206773-12206828)
chr4 (118-173)||(12210922-12210977)
chr4 (118-173)||(31135179-31135234)
chr4 (123-173)||(31908362-31908412)
chr4 (118-173)||(20627536-20627591)
chr4 (118-173)||(42523889-42523944)
chr4 (118-159)||(6310842-6310883)
chr4 (122-159)||(6311792-6311829)
chr4 (120-173)||(20628344-20628397)
chr4 (122-170)||(42523214-42523262)
chr4 (122-173)||(34978353-34978404)
chr4 (122-173)||(48315193-48315244)
[»] chr3 (12 HSPs)
chr3 (118-173)||(17619148-17619203)
chr3 (120-173)||(27359841-27359894)
chr3 (118-173)||(4300942-4300997)
chr3 (118-169)||(17615035-17615086)
chr3 (122-173)||(27317483-27317534)
chr3 (119-173)||(28422850-28422904)
chr3 (118-164)||(33148303-33148348)
chr3 (136-173)||(54285837-54285874)
chr3 (122-173)||(40929865-40929916)
chr3 (103-173)||(51341883-51341954)
chr3 (136-173)||(29032826-29032863)
chr3 (118-159)||(33147355-33147396)
[»] scaffold0676 (1 HSPs)
scaffold0676 (124-173)||(3171-3220)
[»] chr2 (6 HSPs)
chr2 (124-173)||(39240864-39240913)
chr2 (137-173)||(9244253-9244289)
chr2 (118-173)||(16591530-16591585)
chr2 (119-173)||(18767574-18767628)
chr2 (105-173)||(5483904-5483973)
chr2 (122-173)||(9244003-9244054)
[»] chr5 (4 HSPs)
chr5 (122-173)||(33471174-33471225)
chr5 (121-170)||(22671618-22671667)
chr5 (124-173)||(30667873-30667922)
chr5 (122-173)||(33471861-33471912)
[»] scaffold0112 (1 HSPs)
scaffold0112 (135-173)||(24737-24775)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 32260147 - 32260257
Alignment:
Q  214 gaggccatatcaaatgagaggactctttataatgagaggattaaatctcaaccttttgatctaatcaaacggttatggcatatgtc-ttttttctgtgct 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  32260147 gaggccatatcaaatgagaggactctttataatgagaggattaaatctcaacctttagatctaatcaaacggttatggcatatgtctttttttctgtgct 32260246  T
Q  313 tttctttctct 323  Q
    |||||||||||    
T  32260247 tttctttctct 32260257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 29374980 - 29375102
Alignment:
Q  52 ctgacaattacaattgtgtcctttaattttaattggttcnnnnnnnnnnnncatgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagacc 150  Q
    |||||||||||||||||||||||||||||||||||||||            ||||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  29374980 ctgacaattacaattgtgtcctttaattttaattggttcaaaaaacaaaaacatggatatttttgtccaagtgaaaaggtgctccttgctaaaatggacc 29375079  T
Q  151 ttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||| |||||    
T  29375080 ttcatgaaaatgagtggatctat 29375102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 19237607 - 19237662
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  19237607 caagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctat 19237662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 8683878 - 8683915
Alignment:
Q  136 ttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8683878 ttgctaaaatagaccttcatgaaaatgagtgggtctat 8683915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 17280703 - 17280755
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtc 170  Q
    |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  17280703 caagtgaaaaggtgttggttgctaaaatagaccttaatgaaaatgagtgggtc 17280755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 17279963 - 17279893
Alignment:
Q  104 atgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |||| |||| ||||||||||  |||||||||||||||||||| ||||||| | |||||||    
T  17279963 atgggtatttgtgtccaagtaaaaaggtgctggttgctaaaatagaccttcataaaaatgaataggtctat 17279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 10793583 - 10793638
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| | |||||||||||||||||| || |||  ||||||||||||    
T  10793583 caagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctat 10793638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 5860596 - 5860559
Alignment:
Q  136 ttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  5860596 ttgctaaaatacaccttcataaaaatgagtgggtctat 5860559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7001777 - 7001832
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatg-agtgggtctat 173  Q
    |||||||||||||| | | ||||||||||||||||||| |||||| |||||||||||    
T  7001777 caagtgaaaaggtgttgcatgctaaaatagaccttcat-aaaatgaagtgggtctat 7001832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 49569951 - 49569849
Alignment:
Q  217 gccatatcaaatgagaggactctttataatgagaggattaaatctcaaccttttgatctaatcaaacggttatggcatatgtcttttttctgtgcttttc 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49569951 gccatatcaaatgagaggactctttataatgagatgattaaatctcaacctttagatctaatcaaacggttatggcatatgtcttttttctgtgcttttc 49569852  T
Q  317 ttt 319  Q
    |||    
T  49569851 ttt 49569849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 16802104 - 16801982
Alignment:
Q  52 ctgacaattacaattgtgtcctttaattttaattggttcnnnnnnnnnnnncatgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagacc 150  Q
    |||||||||||||||||||||| ||||||||||||||||            |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  16802104 ctgacaattacaattgtgtcctataattttaattggttcaaaaaacaaaaacatgggtatttttgtccaagtgaaaaggtgccccttgctaaaatagacc 16802005  T
Q  151 ttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||||||||||    
T  16802004 ttcatgaaaatgagtgggtctat 16801982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 16802620 - 16802741
Alignment:
Q  53 tgacaattacaattgtgtcctttaattttaattggttcnnnnnnnnnnnncatgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagacct 151  Q
    ||||||||||| ||||||||||||||||||||||||||             ||||||  ||||||| |||||||||||| || |||||||||||||||||    
T  16802620 tgacaattacatttgtgtcctttaattttaattggttcaaaaaacaaaaatatgggtccttttgtccaagtgaaaaggtacttcttgctaaaatagacct 16802719  T
Q  152 tcatgaaaatgagtgggtctat 173  Q
    | || |||||||||||||||||    
T  16802720 ttataaaaatgagtgggtctat 16802741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 17239414 - 17239465
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  17239414 tgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctat 17239465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 42026960 - 42026905
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  42026960 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctat 42026905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 42031697 - 42031752
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  42031697 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctat 42031752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 17238656 - 17238606
Alignment:
Q  123 gaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  17238656 gaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctat 17238606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 34268040 - 34267985
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| | |||||||||||||||||| || |||  ||||||||||||    
T  34268040 caagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctat 34267985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 9045076 - 9045002
Alignment:
Q  217 gccatatcaaatgagaggactctttataatgagaggattaaatctcaaccttttgatctaatcaaacggttatgg 291  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||| || ||||||||||||| |||||||    
T  9045076 gccatatcaaatgagatgactctttattatgagagggttaaatctcaacccttagatctaatcaaacagttatgg 9045002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 16106028 - 16106083
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  16106028 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctat 16106083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 16113268 - 16113323
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  16113268 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctat 16113323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 16101587 - 16101532
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||| ||||||    
T  16101587 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctat 16101532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 30971349 - 30971294
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||    
T  30971349 caagtgaaaaagtgatggttgctaaaatagaccttcatgaaaatgagtgggtctat 30971294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 5152461 - 5152512
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||  ||||||||||||||||||||| |||||||| ||||||||    
T  5152461 tgaaaaggtgccacttgctaaaatagaccttcataaaaatgagcgggtctat 5152512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 30972014 - 30972065
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  30972014 tgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctat 30972065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 12836756 - 12836707
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||| |||||||||||||||||||||||||||   ||||||||||    
T  12836756 aaaaggtgcaccttgctaaaatagaccttcatgaaaaaatgtgggtctat 12836707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 42757664 - 42757615
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||  |||||||||||| |||||||| |||||||||||||||||    
T  42757664 aaaaggtgcagcttgctaaaataaaccttcataaaaatgagtgggtctat 42757615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 1274127 - 1274166
Alignment:
Q  134 ccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  1274127 ccttgctaaaatagaccttcatgaaaataagttggtctat 1274166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 23220087 - 23220017
Alignment:
Q  104 atgggtatttttgtcaagtgaaaa-ggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| ||||||  ||||| |||||  ||||||||||||||||||||| |||| | ||||||||||    
T  23220087 atgggtatttatgtcaaaagaaaaaggtgcagcttgctaaaatagaccttcataaaaaagggtgggtctat 23220017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 20104363 - 20104403
Alignment:
Q  214 gaggccatatcaaatgagaggactctttataatgagaggat 254  Q
    |||| |||||||||||||||||||| |||| ||||||||||    
T  20104363 gaggacatatcaaatgagaggactccttattatgagaggat 20104403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 42758394 - 42758462
Alignment:
Q  106 gggtatttttgt-caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||| |||  ||||| ||||  |||||||||||||||||||||   |||||||||||||||    
T  42758394 gggtatttttgtacaaaggaaaatgtgcagcttgctaaaatagaccttcatattaatgagtgggtctat 42758462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 5997615 - 5997670
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5997615 caagtgaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctat 5997670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 1409440 - 1409385
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  1409440 caagagaaaaggtgcaccttgctaaaatagaccttcataaaaatgagtgggtctat 1409385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 27268246 - 27268301
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  27268246 caagtgaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtggatctat 27268301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 38887389 - 38887340
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  38887389 aaaaggtgcaccttgctaaaatagaccttcatgaaaatgagtgagtctat 38887340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 41970965 - 41970897
Alignment:
Q  106 gggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||| ||||| ||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||    
T  41970965 gggtattcttgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaatgagtgggtctat 41970897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 5995313 - 5995262
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  5995313 tgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctat 5995262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 45551075 - 45551007
Alignment:
Q  106 gggtatttttgtcaag-tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||| ||||||||||  |||||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  45551075 gggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctat 45551007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 45551796 - 45551864
Alignment:
Q  106 gggtatttttgtcaag-tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||| ||||||||||  |||||||||| |  |||||||||||||||||||||||| |||||||||||||    
T  45551796 gggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctat 45551864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 27258111 - 27258167
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaataga-ccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |  ||||||||||||| ||||||||||||||||||| |||||    
T  27258111 caagtgaaaaggtgttgattgctaaaatagacccttcatgaaaatgagtggatctat 27258167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 28778123 - 28778158
Alignment:
Q  138 gctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28778123 gctaaaatagaccttgatgaaaatgagtgggtctat 28778158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 27258046 - 27258079
Alignment:
Q  52 ctgacaattacaattgtgtcctttaattttaatt 85  Q
    |||||||||||| |||||||||||||||||||||    
T  27258046 ctgacaattacatttgtgtcctttaattttaatt 27258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 27268178 - 27268211
Alignment:
Q  52 ctgacaattacaattgtgtcctttaattttaatt 85  Q
    |||||||||||| |||||||||||||||||||||    
T  27268178 ctgacaattacagttgtgtcctttaattttaatt 27268211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 27875988 - 27875955
Alignment:
Q  127 aggtgctccttgctaaaatagaccttcatgaaaa 160  Q
    |||||| |||||||||||||||||||||||||||    
T  27875988 aggtgcaccttgctaaaatagaccttcatgaaaa 27875955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 45396 - 45342
Alignment:
Q  119 aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  45396 aagtgaaaaggtgcatcttgctaaaatagaccttcatgaaaatgagtgggtctat 45342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 31914587 - 31914532
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  31914587 caagtgaaaaggtgctggttgctaaaatagatcttcatgaaaatgagtgggtctat 31914532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 48314447 - 48314376
Alignment:
Q  103 catgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||| ||| || |||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  48314447 catgggtattttagtctaaatgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctat 48314376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 31689239 - 31689186
Alignment:
Q  120 agtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  31689239 agtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctat 31689186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 23088353 - 23088285
Alignment:
Q  106 gggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||| ||||| |||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  23088353 gggtattcttgtcgaagtgagaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctat 23088285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 23089261 - 23089329
Alignment:
Q  106 gggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||| ||||| ||||||||||||| |  |||||||||||||||| |||||||||||||||||||||    
T  23089261 gggtattcttgtccaagtgaaaaggtgttggttgctaaaatagacctacatgaaaatgagtgggtctat 23089329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 12206828 - 12206773
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||||||||||    
T  12206828 caagtgaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctat 12206773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 12210922 - 12210977
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  12210922 caagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctat 12210977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 31135234 - 31135179
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||| |||||||    
T  31135234 caagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagttggtctat 31135179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 31908362 - 31908412
Alignment:
Q  123 gaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||    
T  31908362 gaaaaggtgcaacttgctaaaatagaccttcataaaaatgagtgggtctat 31908412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 20627591 - 20627536
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |   ||||||||||||| |||||||||||||||||||||||    
T  20627591 caagtgaaaaggtgttgggtgctaaaatagactttcatgaaaatgagtgggtctat 20627536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 42523889 - 42523944
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||    
T  42523889 caagtgaaaaggtgttacttgctaaaacagactttcatgaaaatgagtgagtctat 42523944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 6310883 - 6310842
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaa 159  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  6310883 caagtgaaaaggtgcaccttcctaaaatagaccttcatgaaa 6310842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 6311792 - 6311829
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaa 159  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  6311792 tgaaaaggtgcaccttgctaaaatagaccttcatgaaa 6311829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 20628344 - 20628397
Alignment:
Q  120 agtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||| | |||| |||||||||||||||| |||||| ||||||||||    
T  20628344 agtgaaaaggtgttgcttggtaaaatagaccttcataaaaatgggtgggtctat 20628397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 42523262 - 42523214
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtc 170  Q
    |||||||||| | |||||||||| |||||||||| ||||||||||||||    
T  42523262 tgaaaaggtgttacttgctaaaagagaccttcataaaaatgagtgggtc 42523214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 34978404 - 34978353
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |  ||| |||||||||||||||| |||||||||||||||||    
T  34978404 tgaaaaggtgttggttgataaaatagaccttcataaaaatgagtgggtctat 34978353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 48315193 - 48315244
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| | |||||||||||| ||||| |||||||| |||||||||||    
T  48315193 tgaaaaggtgttgcttgctaaaataaacctttatgaaaataagtgggtctat 48315244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 17619148 - 17619203
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  17619148 caagtgaaaaggtactggttgctaaaatagaccttcatgaaaatgagtgggtctat 17619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 27359841 - 27359894
Alignment:
Q  120 agtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  27359841 agtgaaaaggtgttgtttgctaaaatagaccttcatgaaaatgagtgggtctat 27359894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 4300997 - 4300942
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |  ||||||||||||| |||||||||||| |||||||||||    
T  4300997 caagtgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctat 4300942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 17615086 - 17615035
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggt 169  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||||||    
T  17615086 caagtgaaaaggtgcaagttgctaaaatagaccttcataaaaatgagtgggt 17615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 27317483 - 27317534
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  27317483 tgaaaaggtgttgcttgctaaaataaaccttcatgaaaatgagcgggtctat 27317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 28422850 - 28422904
Alignment:
Q  119 aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||| |  |||||||||||||| ||||| |||||||||||||||||    
T  28422850 aagtgaaaaggtgatggttgctaaaatagactttcataaaaatgagtgggtctat 28422904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 33148303 - 33148348
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgag 164  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  33148303 caagtgaaaaggtgcaccttgctaaaatagaccttcat-aaaatgag 33148348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 54285837 - 54285874
Alignment:
Q  136 ttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||||||| |||||||||||||||||    
T  54285837 ttgctaaaatagaccttcataaaaatgagtgggtctat 54285874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 40929865 - 40929916
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |  ||||||||||| |||||||| |||||||||||||||||    
T  40929865 tgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctat 40929916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 51341954 - 51341883
Alignment:
Q  103 catgggtatttttgt-caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |||| ||||| |||||||| |  ||| |||||||||||||||||| ||||||| |||||||    
T  51341954 catgggtattcttgttcaagtaaaaaggtgttggttgttaaaatagaccttcatgagaatgagtaggtctat 51341883  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 29032826 - 29032863
Alignment:
Q  136 ttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  29032826 ttgctaaaatagaccttcataaaaatgaatgggtctat 29032863  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 33147396 - 33147355
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaa 159  Q
    |||||||||||||||  |||||||||||||| ||||||||||    
T  33147396 caagtgaaaaggtgcatcttgctaaaatagatcttcatgaaa 33147355  T

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Target: scaffold0676 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 3220 - 3171
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  3220 aaaaggtgcatcttgctaaaatagaccttcatgaaaatgagcgggtctat 3171  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 39240864 - 39240913
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  39240864 aaaaggtgcatcttgctaaaatagaccttcatgaaaatgggtgggtctat 39240913  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 9244289 - 9244253
Alignment:
Q  137 tgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9244289 tgctaaaatagaccttcataaaaatgagtgggtctat 9244253  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 16591530 - 16591585
Alignment:
Q  118 caagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||||||| |  |||||||||||||||||||||||| | | |||||||||    
T  16591530 caagtgaaaaggtgttggttgctaaaatagaccttcatgaaattaaatgggtctat 16591585  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 18767574 - 18767628
Alignment:
Q  119 aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||||||| |  ||||||||||||||||| || |||||||||| ||||||    
T  18767574 aagtgaaaaggtgttggttgctaaaatagacctttataaaaatgagtgagtctat 18767628  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 5483904 - 5483973
Alignment:
Q  105 tgggtatttttgtc-aagtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||| |||||||| || |||||||||| |   |||||||||||||||| |||||||||||| |||||||    
T  5483904 tgggtgtttttgtccaattgaaaaggtgttggatgctaaaatagacctttatgaaaatgagttggtctat 5483973  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 9244054 - 9244003
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatga-gtgggtctat 173  Q
    |||||||||||||  ||||||||||||||||||| ||||||| ||||||||||    
T  9244054 tgaaaaggtgctcggtgctaaaatagaccttcat-aaaatgaagtgggtctat 9244003  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 33471225 - 33471174
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||||||||| |  |||||||||||||||||||||||||||| |||||||||    
T  33471225 tgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctat 33471174  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 22671667 - 22671618
Alignment:
Q  121 gtgaaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtc 170  Q
    ||||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  22671667 gtgaaaaggtgttggttgttaaaatagaccttcatgaaaatgagtgggtc 22671618  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 30667922 - 30667873
Alignment:
Q  124 aaaaggtgctccttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    ||||||||| ||||||||||||| |||||||||||||   ||||||||||    
T  30667922 aaaaggtgcaccttgctaaaatataccttcatgaaaaaaggtgggtctat 30667873  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 33471861 - 33471912
Alignment:
Q  122 tgaaaaggtgctccttgctaaaatagaccttcatgaaaatg-agtgggtctat 173  Q
    ||||||||||||  |||||||||||||||||||| |||||| |||||||||||    
T  33471861 tgaaaaggtgctagttgctaaaatagaccttcat-aaaatgaagtgggtctat 33471912  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 24775 - 24737
Alignment:
Q  135 cttgctaaaatagaccttcatgaaaatgagtgggtctat 173  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  24775 cttgttaaaatagaacttcatgaaaatgagtgggtctat 24737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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