View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_high_55 (Length: 319)

Name: NF0829_high_55
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_high_55
NF0829_high_55
[»] chr2 (10 HSPs)
chr2 (221-314)||(35235003-35235096)
chr2 (104-186)||(35235173-35235254)
chr2 (52-104)||(35235299-35235351)
chr2 (126-183)||(25836671-25836727)
chr2 (219-267)||(24007781-24007829)
chr2 (126-177)||(23956222-23956273)
chr2 (126-158)||(736060-736092)
chr2 (104-152)||(29080748-29080796)
chr2 (231-279)||(38010732-38010780)
chr2 (126-178)||(38216095-38216147)
[»] chr5 (17 HSPs)
chr5 (195-279)||(17128254-17128338)
chr5 (126-279)||(24030191-24030342)
chr5 (217-277)||(22201984-22202044)
chr5 (126-183)||(41419572-41419629)
chr5 (126-178)||(43268594-43268646)
chr5 (217-276)||(29922237-29922296)
chr5 (217-279)||(11163317-11163379)
chr5 (217-279)||(14243799-14243861)
chr5 (217-279)||(27981960-27982022)
chr5 (125-159)||(29658012-29658046)
chr5 (126-240)||(41059747-41059860)
chr5 (126-172)||(42852103-42852149)
chr5 (126-183)||(28625551-28625608)
chr5 (126-183)||(29136784-29136841)
chr5 (235-275)||(8550109-8550149)
chr5 (225-277)||(40697119-40697171)
chr5 (217-277)||(42852000-42852060)
[»] chr1 (12 HSPs)
chr1 (126-183)||(37329370-37329427)
chr1 (219-258)||(15235210-15235249)
chr1 (126-177)||(22593365-22593416)
chr1 (225-279)||(14862946-14863000)
chr1 (225-279)||(14868498-14868552)
chr1 (221-279)||(16225485-16225543)
chr1 (221-279)||(18327500-18327558)
chr1 (219-277)||(22088461-22088519)
chr1 (225-279)||(35897538-35897592)
chr1 (126-183)||(15515305-15515362)
chr1 (227-272)||(17348993-17349038)
chr1 (217-261)||(4068109-4068153)
[»] chr4 (16 HSPs)
chr4 (214-279)||(10794954-10795019)
chr4 (217-277)||(23297416-23297476)
chr4 (126-178)||(15184622-15184674)
chr4 (217-264)||(948063-948110)
chr4 (214-277)||(10796364-10796427)
chr4 (108-178)||(23284731-23284801)
chr4 (217-279)||(43415337-43415399)
chr4 (126-159)||(12495602-12495635)
chr4 (227-272)||(14987526-14987571)
chr4 (126-159)||(24101898-24101931)
chr4 (126-159)||(40699455-40699488)
chr4 (219-272)||(43213643-43213696)
chr4 (225-277)||(4331443-4331495)
chr4 (126-178)||(17222905-17222957)
chr4 (225-277)||(17222942-17222994)
chr4 (104-172)||(41071432-41071500)
[»] chr3 (10 HSPs)
chr3 (126-244)||(42956137-42956254)
chr3 (126-178)||(40581034-40581086)
chr3 (104-172)||(52895341-52895409)
chr3 (125-178)||(53217997-53218050)
chr3 (126-178)||(29830597-29830649)
chr3 (217-279)||(29270337-29270399)
chr3 (134-178)||(17752097-17752141)
chr3 (134-178)||(19053417-19053461)
chr3 (126-178)||(37778209-37778261)
chr3 (134-170)||(41601302-41601338)
[»] chr7 (11 HSPs)
chr7 (126-172)||(33204916-33204962)
chr7 (217-272)||(42083465-42083520)
chr7 (217-279)||(14536859-14536920)
chr7 (126-172)||(22032844-22032890)
chr7 (217-279)||(38372534-38372596)
chr7 (195-244)||(1054094-1054143)
chr7 (217-278)||(21249133-21249194)
chr7 (126-159)||(32358704-32358737)
chr7 (126-178)||(25908370-25908422)
chr7 (134-178)||(38372634-38372678)
chr7 (126-178)||(46744029-46744081)
[»] chr8 (5 HSPs)
chr8 (126-178)||(32212973-32213025)
chr8 (126-177)||(16926686-16926737)
chr8 (126-184)||(25333659-25333717)
chr8 (126-183)||(24350477-24350534)
chr8 (218-279)||(32131416-32131477)
[»] scaffold0332 (1 HSPs)
scaffold0332 (126-172)||(14704-14750)
[»] scaffold0057 (1 HSPs)
scaffold0057 (214-244)||(43861-43891)
[»] scaffold0157 (1 HSPs)
scaffold0157 (126-159)||(24842-24875)
[»] chr6 (2 HSPs)
chr6 (126-183)||(10874055-10874112)
chr6 (126-178)||(32165219-32165271)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 35235096 - 35235003
Alignment:
Q  221 taatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtctcgataagaggtttaaacttgggtcctatgctact 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| || ||||||||    
T  35235096 taatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtccggattagaggtttaaacttgggacccatgctact 35235003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 35235254 - 35235173
Alignment:
Q  104 atgaaaaattgtttaggaaataaaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaagtgg 186  Q
    |||||||||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35235254 atgaaaaattgtttattaaataaa-taagattttatgttaattcataagttctcaccaacgataattgtgtcttcgtaagtgg 35235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 35235351 - 35235299
Alignment:
Q  52 tttattttttcctaaaataatacaatgagtaacagtgatgtgagtgtgggaca 104  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  35235351 tttattttttcccaaaacaatacaatgggtaacagtgatgtgagtgtgggaca 35235299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 25836671 - 25836727
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| |||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  25836671 aaataagcttttatgtta-ttcataagttctcactaacgataattgtgtcttcataag 25836727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 24007829 - 24007781
Alignment:
Q  219 aataatacataaaaacttatttatttatagaagctattttgcataaatt 267  Q
    ||||||||||||||| ||||||||||||  || ||||||||||||||||    
T  24007829 aataatacataaaaatttatttatttatctaaactattttgcataaatt 24007781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 23956222 - 23956273
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtctt 177  Q
    ||||||| |||||||||||||||||||||||||  ||||| |||||| ||||    
T  23956222 aaataagtttttatgttaatttataagttctcattaacgaaaattgtatctt 23956273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 736092 - 736060
Alignment:
Q  126 aaataagattttatgttaatttataagttctca 158  Q
    ||||||| |||||||||||||||||||||||||    
T  736092 aaataagtttttatgttaatttataagttctca 736060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 29080796 - 29080748
Alignment:
Q  104 atgaaaaattgtttaggaaataaaataagattttatgttaatttataag 152  Q
    ||||||||| ||| | ||||  |||||||||||||||||||||||||||    
T  29080796 atgaaaaatagttaatgaaaataaataagattttatgttaatttataag 29080748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 38010732 - 38010780
Alignment:
Q  231 aaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||| |||||||  | ||||||||||||||| |||||||||||||||    
T  38010732 aaacttgtttatttgcataagctattttgcatatattcaaaaataagtc 38010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 38216147 - 38216095
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| ||||||||||| | |||||||||||| ||||| |||||| |||||    
T  38216147 aaataagcttttatgttaactcataagttctcactaacgaaaattgtatcttc 38216095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 17128338 - 17128254
Alignment:
Q  195 ataaacaactttgatatgtttttgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||| ||||||||| |||| |||||||||||||||| |||||||||||  | ||||| ||||||||||  |||||||||||||    
T  17128338 ataaactactttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtc 17128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 24030342 - 24030191
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaagtggnnnnnnnnataaacaactttgatatgtttttgaataata 225  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||||| || ||| |||||         |||||| ||||||| | | || |||||||||    
T  24030342 aaataagcttttatgttaattcataagttctcactaacgaaaattgtatcctcgcaagtg--ttttttcataaactactttgacaagcttatgaataata 24030245  T
Q  226 cataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||| |||||||||||  | ||||| ||||| ||||  | |||||||||||    
T  24030244 cataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtc 24030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 22201984 - 22202044
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    |||||||||||||||| |||||||||||| | ||||| ||||||||||  |||||||||||    
T  22201984 tgaataatacataaaagcttatttatttacataagctgttttgcataagctcaaaaataag 22202044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 41419629 - 41419572
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||| ||||    
T  41419629 aaataagtttttatgttaattgataagttctcactaacgaaaattgtatcttcataag 41419572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 43268594 - 43268646
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||||| |||||    
T  43268594 aaataagcttttatgttaatttataagttctcactaacaaaaattgtatcttc 43268646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 29922237 - 29922296
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataa 276  Q
    ||||||||||||||||||||||||||||  | || || ||||||||||  ||||||||||    
T  29922237 tgaataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaataa 29922296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 11163317 - 11163379
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||| ||||||||||||||||| ||||| | ||||| ||||||||||  | |||||||||||    
T  11163317 tgaatcatacataaaaacttattgatttacataagctgttttgcataagctaaaaaataagtc 11163379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 14243861 - 14243799
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||| |||||| || |||||||||||| | ||||| ||||||||||  |||||||||||||    
T  14243861 tgaatattacatagaagcttatttatttacataagctgttttgcataatctcaaaaataagtc 14243799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 27981960 - 27982022
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||| ||||||||||  | ||| | ||||| |||| ||||||||||||||    
T  27981960 tgaataatacataaaaatttatttattttcataagatgttttgtataagttcaaaaataagtc 27982022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 29658012 - 29658046
Alignment:
Q  125 aaaataagattttatgttaatttataagttctcac 159  Q
    |||||||| ||||||||||||||||||||||||||    
T  29658012 aaaataagcttttatgttaatttataagttctcac 29658046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 41059747 - 41059860
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaagtggnnnnnnnnataaacaactttgatatgtttttgaataata 225  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||||  ||||| |||| |         ||||||||| |||||| | || |||||||||    
T  41059747 aaataagcttttatgttaattcataagttctcactaacgaaaattgaatcttcataag-gtgatttttcataaacaaccttgataagcttatgaataata 41059845  T
Q  226 cataaaaacttattt 240  Q
    ||||||| |||||||    
T  41059846 cataaaagcttattt 41059860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 42852149 - 42852103
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||| ||||||||||||| |||||||||||| ||||| ||||||    
T  42852149 aaataagcttttatgttaattcataagttctcactaacgaaaattgt 42852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 28625608 - 28625551
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| ||||||||||||| ||| |||||||| ||||| |||||| ||||| ||||    
T  28625608 aaataagcttttatgttaattcataggttctcactaacgaaaattgtatcttcataag 28625551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 29136784 - 29136841
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| ||||||||||||| |||||| ||||||||||  |||||| ||||| ||||    
T  29136784 aaataagcttttatgttaattcataagtcctcaccaacggaaattgtatcttcataag 29136841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 8550149 - 8550109
Alignment:
Q  235 ttatttatttatagaagctattttgcataaattcaaaaata 275  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  8550149 ttatttatttatataaactattttgcataagttcaaaaata 8550109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 40697119 - 40697171
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    |||||||| ||||||||||| || |||||||||| |||||  |||||||||||    
T  40697119 acataaaagcttatttatttgtataagctatttttcataagctcaaaaataag 40697171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 42852060 - 42852000
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    |||||||||||||||| |||||||||||  | ||||| ||||||||||   ||||||||||    
T  42852060 tgaataatacataaaagcttatttatttgaataagctgttttgcataagcccaaaaataag 42852000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 37329370 - 37329427
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  37329370 aaataagcttttatgttaatttataagttctcaccaacgaaaattgtatcttcataag 37329427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 15235210 - 15235249
Alignment:
Q  219 aataatacataaaaacttatttatttatagaagctatttt 258  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  15235210 aataatacataaaaacttatttatttacataagctatttt 15235249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 22593365 - 22593416
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtctt 177  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||||| ||||    
T  22593365 aaataagcttttatgttaatttataagttctcactaacaaaaattgtatctt 22593416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 14862946 - 14863000
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||||||||| | | ||||||  ||||| |||||||||||||    
T  14862946 acataaaaacttatttatttatatatgttattttttataaactcaaaaataagtc 14863000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 14868498 - 14868552
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||||||||| | | ||||||  ||||| |||||||||||||    
T  14868498 acataaaaacttatttatttatatatgttattttttataaactcaaaaataagtc 14868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 16225543 - 16225485
Alignment:
Q  221 taatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||||||||||| | || || ||||||||||  || ||||||||||    
T  16225543 taatacataaaaacttatttatttacataaactgttttgcataagctctaaaataagtc 16225485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 18327558 - 18327500
Alignment:
Q  221 taatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||||||||| |||||||||||  | ||||| ||||| |||||||| ||||||||||    
T  18327558 taatacataaaagcttatttatttgcataagctgttttgaataaattccaaaataagtc 18327500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 22088461 - 22088519
Alignment:
Q  219 aataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    ||||||||||||||||||||||||||| | ||||| ||||  ||||| || ||||||||    
T  22088461 aataatacataaaaacttatttatttacataagctgttttatataaactctaaaataag 22088519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 35897592 - 35897538
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||  ||||||||||| | |||||||||| ||||| ||||||||||||||    
T  35897592 acataaaagtttatttatttacataagctatttttcataagttcaaaaataagtc 35897538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 15515305 - 15515362
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| ||| ||||||||| |||||||||||| ||||| |||||| ||||| ||||    
T  15515305 aaataagctttcatgttaattcataagttctcactaacgaaaattgtatcttcataag 15515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 17348993 - 17349038
Alignment:
Q  227 ataaaaacttatttatttatagaagctattttgcataaattcaaaa 272  Q
    ||||||||||||||||||| | |||||||||| ||||| |||||||    
T  17348993 ataaaaacttatttatttacataagctatttttcataagttcaaaa 17349038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 4068153 - 4068109
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgca 261  Q
    |||||||||||||||| |||||||||||  | |||||||||||||    
T  4068153 tgaataatacataaaagcttatttatttgcacaagctattttgca 4068109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 10794954 - 10795019
Alignment:
Q  214 ttttgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||| ||||||||||||||||||||||||||| | ||||| ||||||||||  || ||||||||||    
T  10794954 ttttaaataatacataaaaacttatttatttacacaagctgttttgcataagctctaaaataagtc 10795019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 23297476 - 23297416
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||||  |||||||||||    
T  23297476 tgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataag 23297416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 15184674 - 15184622
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||| ||||||||||||||||||| ||||| |||||| |||||    
T  15184674 aaataagtttttattttaatttataagttctcactaacgaaaattgtatcttc 15184622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 948110 - 948063
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataa 264  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||||    
T  948110 tgaataatacataaaagcttatttattttcataagctattttgcataa 948063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 10796427 - 10796364
Alignment:
Q  214 ttttgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    |||| ||||||||||||||||||||||||||| | ||| | ||||||||||  || ||||||||    
T  10796427 ttttaaataatacataaaaacttatttatttacacaagttgttttgcataagctctaaaataag 10796364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 23284731 - 23284801
Alignment:
Q  108 aaaattgtttaggaaataaaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||| ||||||| ||  ||||||| |||||| |||||||||||| |||||| ||||| |||||| |||||    
T  23284731 aaaatagtttaggtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttc 23284801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 43415337 - 43415399
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||||||||||||||  ||||| | |||| | |||  |||||||||||||    
T  43415337 tgaataatacataaaaacttatttatttgcagaagttgttttacttaagctcaaaaataagtc 43415399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 12495602 - 12495635
Alignment:
Q  126 aaataagattttatgttaatttataagttctcac 159  Q
    ||||||| ||||||||||||||||||||||||||    
T  12495602 aaataagtttttatgttaatttataagttctcac 12495635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 14987571 - 14987526
Alignment:
Q  227 ataaaaacttatttatttatagaagctattttgcataaattcaaaa 272  Q
    ||||||||||||||||||||| ||||| |||| |||||| ||||||    
T  14987571 ataaaaacttatttatttatataagctgtttttcataaactcaaaa 14987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 24101898 - 24101931
Alignment:
Q  126 aaataagattttatgttaatttataagttctcac 159  Q
    ||||||| ||||||||||||||||||||||||||    
T  24101898 aaataagtttttatgttaatttataagttctcac 24101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 40699488 - 40699455
Alignment:
Q  126 aaataagattttatgttaatttataagttctcac 159  Q
    ||||||||||||||||||||| ||||||||||||    
T  40699488 aaataagattttatgttaattcataagttctcac 40699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 43213643 - 43213696
Alignment:
Q  219 aataatacataaaaacttatttatttatagaagctattttgcataaattcaaaa 272  Q
    ||||||||||||||| |||||||||| || || |||||||  ||||||||||||    
T  43213643 aataatacataaaaaattatttatttgtataaactattttatataaattcaaaa 43213696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 4331443 - 4331495
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    ||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||    
T  4331443 acataaaaacttatttatttacataagttatttttcataaactcaaagataag 4331495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 17222957 - 17222905
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| ||||||||||||| ||||||||| || ||||| |||||| |||||    
T  17222957 aaataagtttttatgttaattcataagttctaactaacgaaaattgtatcttc 17222905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 17222942 - 17222994
Alignment:
Q  225 acataaaaacttatttatttatagaagctattttgcataaattcaaaaataag 277  Q
    ||||||||||||||||||||  | |||||||||| |||||  |||||||||||    
T  17222942 acataaaaacttatttatttgaataagctatttttcataagctcaaaaataag 17222994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 41071500 - 41071432
Alignment:
Q  104 atgaaaaattgtttaggaaataaaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||||| | ||| ||||  ||||||| ||||||||||||||| |||||||||| || || ||||||    
T  41071500 atgaaaaatagcttaagaaaataaataagcttttatgttaatttacaagttctcactaatgagaattgt 41071432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 42956137 - 42956254
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaagtggnnnnnnnnataaacaactttgatatgtttttgaataata 225  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||| ||||  ||||  |        |||||| |||| || | |||| |||||||||    
T  42956137 aaataagtttttatgttaatttataagttctcactaacgaaaattgtatctttataagctg-ttttatcataaactacttcgacaagtttatgaataata 42956235  T
Q  226 cataaaaacttatttattt 244  Q
    |||||||||||||||||||    
T  42956236 cataaaaacttatttattt 42956254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 40581034 - 40581086
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||||| |||||    
T  40581034 aaataagattttatgttaattcataagttctcactaacgaaaattgtttcttc 40581086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 52895341 - 52895409
Alignment:
Q  104 atgaaaaattgtttaggaaataaaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||| |||| ||||||| ||||| ||||||    
T  52895341 atgaaaaattgtttaggcaaataaataagcttttatgttaattcataaattctcactaacgaaaattgt 52895409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 53217997 - 53218050
Alignment:
Q  125 aaaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    |||||||| |||||| ||||||||||||||||||| ||||| |||||| |||||    
T  53217997 aaaataagcttttattttaatttataagttctcactaacgaaaattgtatcttc 53218050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 29830597 - 29830649
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||| ||||||||||||||||||| ||||| |||||| |||||    
T  29830597 aaataagtttttattttaatttataagttctcactaacgaaaattgtatcttc 29830649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 29270399 - 29270337
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||||||||||||| ||||||||||  || ||| | ||||||||||  |||||||||||||    
T  29270399 tgaataatacataaaagcttatttattcctataagttgttttgcataagctcaaaaataagtc 29270337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 17752097 - 17752141
Alignment:
Q  134 ttttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||||||||||||||||||| || ||||| |||||| |||||    
T  17752097 ttttatgttaatttataagttcttactaacgaaaattgtatcttc 17752141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 19053417 - 19053461
Alignment:
Q  134 ttttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||||||||||||||||||| || ||||| |||||| |||||    
T  19053417 ttttatgttaatttataagttcttactaacgaaaattgtatcttc 19053461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 37778261 - 37778209
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||| ||||||||||||||||||| ||| | |||||| |||||    
T  37778261 aaataagcttttattttaatttataagttctcactaacaaaaattgtatcttc 37778209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 41601302 - 41601338
Alignment:
Q  134 ttttatgttaatttataagttctcaccaacgataatt 170  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  41601302 ttttatgttaatttataaattctcaccaacgaaaatt 41601338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 33204962 - 33204916
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  33204962 aaataagcttttatgttaattcataagttctcactaacgataattgt 33204916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 42083465 - 42083520
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaa 272  Q
    ||||||||||||||||||||||||||||| | |||| ||| ||||| | |||||||    
T  42083465 tgaataatacataaaaacttatttatttacataagccattatgcatgagttcaaaa 42083520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 14536920 - 14536859
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||||||||||||| |||||||||| || ||| | ||||  |||||||||||||||||||    
T  14536920 tgaataatacataaaaa-ttatttatttctataagttgtttttaataaattcaaaaataagtc 14536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 22032890 - 22032844
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||| |||||| ||||||||||||||||||| ||||| ||||||    
T  22032890 aaataagtttttatcttaatttataagttctcactaacgaaaattgt 22032844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 38372596 - 38372534
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    |||||||||||||| | |||||||||||  | ||||| ||||||||||  |||||||||||||    
T  38372596 tgaataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtc 38372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 1054094 - 1054143
Alignment:
Q  195 ataaacaactttgatatgtttttgaataatacataaaaacttatttattt 244  Q
    |||||| || |||| || |||||||||||||||||||| |||||||||||    
T  1054094 ataaactacattgaaatttttttgaataatacataaaagcttatttattt 1054143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 21249194 - 21249133
Alignment:
Q  217 tgaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagt 278  Q
    ||||||||||||||||||||||||||||  | |||   |||||||||||  |||||||||||    
T  21249194 tgaataatacataaaaacttatttatttgcataagtagttttgcataaacgcaaaaataagt 21249133  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 32358737 - 32358704
Alignment:
Q  126 aaataagattttatgttaatttataagttctcac 159  Q
    ||||||| ||||||||||||||||||||||||||    
T  32358737 aaataagcttttatgttaatttataagttctcac 32358704  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 25908422 - 25908370
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||||||||||||||| || |||| ||||| |||||| |||||    
T  25908422 aaataagtttttatgttaatttataacttttcacaaacgaaaattgtatcttc 25908370  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 38372678 - 38372634
Alignment:
Q  134 ttttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||||||||| |||||||||||| ||||| |||||| |||||    
T  38372678 ttttatgttaattcataagttctcactaacgaaaattgtttcttc 38372634  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 46744081 - 46744029
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||||||||||  ||||||||||| ||||| |||||| |||||    
T  46744081 aaataagcttttatgttaattcgtaagttctcactaacgaaaattgtatcttc 46744029  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 32212973 - 32213025
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||||||| ||||||||||||||| || || ||||||||||||    
T  32212973 aaataagcttttatgttattttataagttctcactaatgaaaattgtgtcttc 32213025  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 16926686 - 16926737
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtctt 177  Q
    ||||||| |||||||||||||||||||||||||| ||||  |||||| ||||    
T  16926686 aaataagtttttatgttaatttataagttctcactaacggaaattgtttctt 16926737  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 25333659 - 25333717
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaagt 184  Q
    ||||||| ||||||||||||| ||||||| |||| ||||| |||||| ||||| |||||    
T  25333659 aaataagcttttatgttaattcataagttttcactaacgaaaattgtatcttcataagt 25333717  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 24350477 - 24350534
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||||||||||||||||| ||||||||| || ||||| |||| | ||||| ||||    
T  24350477 aaataagattttatgttaattcataagttcttactaacgaaaattatatcttcataag 24350534  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 32131477 - 32131416
Alignment:
Q  218 gaataatacataaaaacttatttatttatagaagctattttgcataaattcaaaaataagtc 279  Q
    ||||||| ||||||| |||||||||||  | ||||| ||||||||||  |||||||||||||    
T  32131477 gaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtc 32131416  T

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Target: scaffold0332 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 14704 - 14750
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgt 172  Q
    ||||||| ||| |||||||||||||||||||||| ||||| ||||||    
T  14704 aaataagctttcatgttaatttataagttctcactaacgaaaattgt 14750  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 43861 - 43891
Alignment:
Q  214 ttttgaataatacataaaaacttatttattt 244  Q
    |||||||||||||||||||||||||||||||    
T  43861 ttttgaataatacataaaaacttatttattt 43891  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 24875 - 24842
Alignment:
Q  126 aaataagattttatgttaatttataagttctcac 159  Q
    ||||||| ||||||||||||||||||||||||||    
T  24875 aaataagtttttatgttaatttataagttctcac 24842  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 10874112 - 10874055
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttcgtaag 183  Q
    ||||||| ||||||||||||| ||||||| |||||||| | |||||| ||||| ||||    
T  10874112 aaataagcttttatgttaattcataagttttcaccaactaaaattgtatcttcataag 10874055  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 32165219 - 32165271
Alignment:
Q  126 aaataagattttatgttaatttataagttctcaccaacgataattgtgtcttc 178  Q
    ||||||| |||||| |||||||||||| |||||| ||||| |||||| |||||    
T  32165219 aaataagtttttattttaatttataagctctcactaacgaaaattgtatcttc 32165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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