View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_58 (Length: 310)
Name: NF0829_high_58
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 7659524 - 7659825
Alignment:
| Q |
1 |
gaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7659524 |
gaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccctttgatgca |
7659623 |
T |
|
| Q |
101 |
cctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccaccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659624 |
cctcaaattaggttttgtggacgttatcgtggcggcttctggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccaccc |
7659723 |
T |
|
| Q |
201 |
aacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7659724 |
aacaccggagctaaatatatagcttataactatcaagaccttgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatc |
7659823 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
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|
| T |
7659824 |
tc |
7659825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 7624161 - 7623860
Alignment:
| Q |
1 |
gaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7624161 |
gaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttaatgca |
7624062 |
T |
|
| Q |
101 |
cctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7624061 |
cctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccaccc |
7623962 |
T |
|
| Q |
201 |
aacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
7623961 |
aacaccggagctaaatatatagcttataactatcaagatcttgtgtttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatc |
7623862 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
7623861 |
tc |
7623860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 7675151 - 7675437
Alignment:
| Q |
1 |
gaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgca |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||| | || ||||| |||||||| ||| ||||| ||||||| ||| | |||||||||||||||| |
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|
| T |
7675151 |
gaccaaaaccatggccaataataggtaacttaccacaccttggccctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttgatgca |
7675250 |
T |
|
| Q |
101 |
cctcaaattaggttttgtggacgttatcgtggcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccaccc |
200 |
Q |
| |
|
|||||||||||| | ||||| || |||||||||||||| | |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7675251 |
cctcaaattaggctcggtggatgtgatcgtggcggcttcggcctccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggccaccc |
7675350 |
T |
|
| Q |
201 |
aacaccggagctaaatatatagcttataactatcaagatcttgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatc |
287 |
Q |
| |
|
|| |||||||||| || |||| |||||| |||||||| |||||||||| |||||||||||| |||||||| | ||| |||||||| |
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|
| T |
7675351 |
aatgccggagctaagtacataggttataattatcaagaccttgtgtttggtccttatggtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
132 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
231 |
Q |
| |
|
|||||||| | ||| || || |||||||||||||| ||||||||| | || ||| |||||||||| | ||| |||| || ||||| |||| ||||| | |
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| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
|
| Q |
232 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
271 |
Q |
| |
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||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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