View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_6 (Length: 583)
Name: NF0829_high_6
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 17171605 - 17171766
Alignment:
| Q |
17 |
gagatgaagaaaatgacgtctgattacgaggatatacttctgagcatacgattttacaacggggttggttgcattcaatacgaaggttgccaccttcttt |
116 |
Q |
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| T |
17171605 |
gagatgaagaaaatgaggtctgattatgaggata--cttctgagcataccatcttacagcgaggtaggttgcatttaatacgaaggttaccgccttcttt |
17171702 |
T |
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| Q |
117 |
ttcgcatttggatggttcaaatcaggaggttttggcattgagttatcctgatattgctggacaa |
180 |
Q |
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| T |
17171703 |
gtcgcatttggatggtttaaattaagaggttttggcattgagttatcctggtattgttggacaa |
17171766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 473 - 554
Target Start/End: Original strand, 17172808 - 17172889
Alignment:
| Q |
473 |
ataaactattgcactctgatttttgaatttggttttgcactcaaatggacttgcaaattctgctctaatctaatatgactat |
554 |
Q |
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| T |
17172808 |
ataaacttttgcacactgaattttgaatttggttttgtactcagatggacttgcaaattctgctctaatctaatatggctat |
17172889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 464
Target Start/End: Original strand, 17171977 - 17172136
Alignment:
| Q |
302 |
tatgcagatttctagtagactgatactcttatggctatccgtttttcttccttttatatccgtttttctagtatcatccttcaagactctcacaccttag |
401 |
Q |
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| T |
17171977 |
tatgcagtttcctagtacactgatactcttatagttatctgtcttttgtcattttgtatctcttttggt-gtttcatccttcaagactcgcgc--catag |
17172073 |
T |
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| Q |
402 |
tagttgctgcttgatcaaagtttgcgacgattacaacaatgaggctaaagcaattgatgattt |
464 |
Q |
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| T |
17172074 |
tagtcgttgcttgatcaaagtttgcgacaattacaacaatgaggctaaagcaattgatgattt |
17172136 |
T |
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