View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_high_62 (Length: 298)

Name: NF0829_high_62
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_high_62
NF0829_high_62
[»] chr3 (13 HSPs)
chr3 (48-270)||(8095565-8095787)
chr3 (48-270)||(8111753-8111960)
chr3 (185-270)||(8095427-8095512)
chr3 (185-270)||(8111615-8111700)
chr3 (134-258)||(8041131-8041255)
chr3 (185-268)||(8095291-8095374)
chr3 (164-258)||(8040954-8041048)
chr3 (191-254)||(8071894-8071957)
chr3 (134-268)||(8072281-8072415)
chr3 (62-149)||(8071870-8071957)
chr3 (185-268)||(8111479-8111562)
chr3 (131-181)||(8095483-8095533)
chr3 (131-181)||(8111671-8111721)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 8095787 - 8095565
Alignment:
Q  48 caaaaccttctttacctgaattaccaaagccagattatcctaaaatacctgaattaccaaagcctgatgttccaaagattaatgttcctgagttgccaaa 147  Q
    |||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  8095787 caaaaccttctttacctgaattaccaaagccagattttcccaatgtacctgaattaccaaagcctgattttcctaagattaatgttcctgagttgccaaa 8095688  T
Q  148 acctgatttaccaaaagtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattg 247  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||    
T  8095687 atctgatttaccaaacgtacctgaaatgccaaagttagaaattcctaaggtgccggaattgccaaaacctgaactacccaagtttaatgttcctgaattg 8095588  T
Q  248 ccaaaacccgaactacctaaaat 270  Q
    || |||||||| |||||||||||    
T  8095587 cccaaacccgagctacctaaaat 8095565  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 8111960 - 8111753
Alignment:
Q  48 caaaaccttctttacctgaattaccaaagccagattatcctaaaatacctgaattaccaaagcctgatgttccaaagattaatgttcctgagttgccaaa 147  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||  ||||||||||||||||||||               ||||||||||||||||||||    
T  8111960 caaaaccttctttacctgaattaccaaagccaaattttcccaatgtacctgaattaccaaagcct---------------aatgttcctgagttgccaaa 8111876  T
Q  148 acctgatttaccaaaagtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattg 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  8111875 acctgatttaccaaacgtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaaacctgaactacccaagtttaatgttcctgaattg 8111776  T
Q  248 ccaaaacccgaactacctaaaat 270  Q
    || |||||||| |||||||||||    
T  8111775 cccaaacccgagctacctaaaat 8111753  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 8095512 - 8095427
Alignment:
Q  185 gaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaacccgaactacctaaaat 270  Q
    ||||||||||| || || ||| |||||||||  ||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  8095512 gaaattcctaaagtacctgaaatgccaaagcatgaactgcctaagtttaatgttcctgaattgacaaaacccgaactacctaaaat 8095427  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 8111700 - 8111615
Alignment:
Q  185 gaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaacccgaactacctaaaat 270  Q
    ||||||||||| || || ||| |||||||||  ||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  8111700 gaaattcctaaagtacctgaaatgccaaagcatgaactgcctaagtttaatgttcctgaattgacaaaacccgaactacctaaaat 8111615  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 8041131 - 8041255
Alignment:
Q  134 cctgagttgccaaaacctgatttaccaaaagtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagttta 233  Q
    ||||| |||||||||| |||  |||| ||||| |||||  |||| |||  | | ||||||||||| || ||||||||||| || |||||||| || ||||    
T  8041131 cctgaattgccaaaacttgagctacctaaagtccctgagttgcccaagccatatattcctaaggtacctgaattgccaaaacctgaactacctaaattta 8041230  T
Q  234 atgttcctgaattgccaaaacccga 258  Q
    |||| ||||||||||||||||||||    
T  8041231 atgtccctgaattgccaaaacccga 8041255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 8095374 - 8095291
Alignment:
Q  185 gaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaacccgaactacctaaa 268  Q
    ||||||||||| || || ||| |||||||||| |||||||| |||||||||||||| ||||| || |||||||| || ||||||    
T  8095374 gaaattcctaaagtacctgaaatgccaaagcctgaactacctaagtttaatgttcccgaatttccgaaacccgagcttcctaaa 8095291  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 8040954 - 8041048
Alignment:
Q  164 gtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaacccga 258  Q
    |||| |||| ||||||||  |||| | |||||||| || ||| | |||||||| || ||||| ||||||||||||||||||| ||||||||||||    
T  8040954 gtacatgaattgccaaagccagaattacctaaggtacctgaacttccaaagcctgagctacctaagtttaatgttcctgaatggccaaaacccga 8041048  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 8071894 - 8071957
Alignment:
Q  191 cctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaac 254  Q
    |||||||| || ||| | |||||||| || ||||| ||||||||||||||||||||||||||||    
T  8071894 cctaaggtacctgaacttccaaagcctgagctacctaagtttaatgttcctgaattgccaaaac 8071957  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 8072281 - 8072415
Alignment:
Q  134 cctgagttgccaaaacctgatttaccaaaagtacctgaaatgccaaagttagaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagttta 233  Q
    ||||||||||| ||||| ||  ||||||| ||||||||| | |||||  ||||  | ||||| || || |||||| |||| || ||||||||||| || |    
T  8072281 cctgagttgcccaaaccagaaataccaaaggtacctgaattaccaaaactagagttacctaaagtacctgaattggcaaaacctgaactaccgaaattca 8072380  T
Q  234 atgttcctgaattgccaaaacccgaactacctaaa 268  Q
    |||| |||||| | |||||||||||  ||||||||    
T  8072381 atgtccctgaactaccaaaacccgagttacctaaa 8072415  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 8071870 - 8071957
Alignment:
Q  62 cctgaattaccaaagccagattatcctaaaatacctgaattaccaaagcctgatgttccaaagattaatgttcctgagttgccaaaac 149  Q
    ||||||||||| |||||||| |  |||||  |||||||| | |||||||||||  | || ||| ||||||||||||| ||||||||||    
T  8071870 cctgaattacctaagccagaattacctaaggtacctgaacttccaaagcctgagctacctaagtttaatgttcctgaattgccaaaac 8071957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 8111562 - 8111479
Alignment:
Q  185 gaaattcctaaggtgcccgaattgccaaagcccgaactaccgaagtttaatgttcctgaattgccaaaacccgaactacctaaa 268  Q
    ||||||||||| || || ||| || ||||||| |||||||| ||||||||| |||| |||||||| ||||| || || ||||||    
T  8111562 gaaattcctaaagtacctgaaatgtcaaagcctgaactacctaagtttaatattcccgaattgccgaaacctgagcttcctaaa 8111479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 8095533 - 8095483
Alignment:
Q  131 gttcctgagttgccaaaacctgatttaccaaaagtacctgaaatgccaaag 181  Q
    |||||||| ||||||||||||||  | || |||||||||||||||||||||    
T  8095533 gttcctgaattgccaaaacctgaaattcctaaagtacctgaaatgccaaag 8095483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 8111721 - 8111671
Alignment:
Q  131 gttcctgagttgccaaaacctgatttaccaaaagtacctgaaatgccaaag 181  Q
    |||||||| ||||||||||||||  | || |||||||||||||||||||||    
T  8111721 gttcctgaattgccaaaacctgaaattcctaaagtacctgaaatgccaaag 8111671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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