View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_64 (Length: 295)
Name: NF0829_high_64
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_64 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 55 - 295
Target Start/End: Complemental strand, 31505113 - 31504873
Alignment:
| Q |
55 |
acaatatccaacaaaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaag |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505113 |
acaatatccaacaaaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaag |
31505014 |
T |
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| Q |
155 |
tttggaatttggcattttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31505013 |
tttggaatttggcattttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcat |
31504914 |
T |
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| Q |
255 |
gccaaatcatcttattatatgaaaatagataaaataacaaa |
295 |
Q |
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| T |
31504913 |
gccaaatcatcttattatatgaaaatagataaaattacaaa |
31504873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 55 - 273
Target Start/End: Complemental strand, 1699893 - 1699675
Alignment:
| Q |
55 |
acaatatccaacaaaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaag |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1699893 |
acaatatccaacaaaaagattaagtactaaacatcaaagaacgccaaattagaaatcaacacaataaaccaaaaccataataaagccttaccaagtgaag |
1699794 |
T |
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| Q |
155 |
tttggaatttggcattttttcatctcccctaaactttttagcacgacctgaaatacacacatcaacaaagatcaaaacaatgcttggtataatttttcat |
254 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1699793 |
tttggaatttggcattttttcatctcccctaaattttttagcacgacctgaaatacatacatcaacaaagatcaaaacaatgcttggtataatttttcat |
1699694 |
T |
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| Q |
255 |
gccaaatcatcttattata |
273 |
Q |
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||||||||||||||||||| |
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| T |
1699693 |
gccaaatcatcttattata |
1699675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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