View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_1 (Length: 893)
Name: NF0829_low_1
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 122 - 568
Target Start/End: Original strand, 53688728 - 53689172
Alignment:
| Q |
122 |
agaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaa |
221 |
Q |
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| T |
53688728 |
agaaggaactatggagcacaaactcggacttaaatatgccaacaacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaa |
53688827 |
T |
|
| Q |
222 |
ggcttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatctctgtgttgttaaaatatttttcataaaaaccagttg |
321 |
Q |
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| T |
53688828 |
cgcttggtgttgcataatgttcatagtacctgggtttcaatccggagggactacatctgaatct--gtgttgttaaaatatttttcataaaaaccagttg |
53688925 |
T |
|
| Q |
322 |
gtgtattttttggtcaagaaattctccgttaccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatc |
421 |
Q |
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| T |
53688926 |
gtgtattttttggtcaagaaattctccgttcccaaaacaaaacgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatc |
53689025 |
T |
|
| Q |
422 |
tctaaaaggttaacaatctacgccgactatatccgattccaatgtgggtgccgcacctggaattcctccgtccctaatggagaatactaggcactggcgt |
521 |
Q |
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| T |
53689026 |
tcgaaaaggttaacaatctacgccgactatatccgattccaatgtgggtgccgcacctggaattcctccgtccctaatggagaatactaggcactggcgt |
53689125 |
T |
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| Q |
522 |
accgcatcatctctattgtaataatttcttttacttgcagaaaaaga |
568 |
Q |
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| T |
53689126 |
accacatcatctctattgtaataatttcttttacttgcagaaaaaga |
53689172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 650 - 821
Target Start/End: Complemental strand, 53688638 - 53688467
Alignment:
| Q |
650 |
atgaacaaaaagtataccaagattctttttaaaaacttcttcacaataaacacgataaagtcaaaataaactagccgtaacagtaatgaaaatcaatcat |
749 |
Q |
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| T |
53688638 |
atgaacaaaaagtataccaagattctttttaaaaacttcttcacaataaacacgataaagtcaaaataaactagccgtaacagtaatgaaaatcaatcat |
53688539 |
T |
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| Q |
750 |
agtagattagttgatcctgaaattcataaatacttatctttctagaccagggaattaagtactgagtttgtg |
821 |
Q |
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| T |
53688538 |
agcagattagttgatcctgaaattcataaatacttatctttctagaccagggaattaagtaccgagtttgtg |
53688467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 164 - 498
Target Start/End: Original strand, 53695850 - 53696164
Alignment:
| Q |
164 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgcataatgttcatagtacctgggtttcaatc |
263 |
Q |
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| T |
53695850 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatgaatagcagaagaaggcttggtgttgcttt-----------------gtttcattt |
53695932 |
T |
|
| Q |
264 |
cggagggactacatctgaatctctgtgttgttaaaatatttttcataaaaaccagttggtgtattttttggtcaagaaattctccgttaccaaaacaaaa |
363 |
Q |
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| T |
53695933 |
cggagggagtacttctgaatctttgtgttgttaaaatatttttcataaaaaccagttg---tattttctggcaaggaaaagttccgttcccaaaacaaaa |
53696029 |
T |
|
| Q |
364 |
cgaaagaaaaatgggtgttcaatgggatgagttaccgcaagaaatcatagaatcaatctctaaaaggttaacaatctacgccgactatatccgattccaa |
463 |
Q |
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| T |
53696030 |
ccaaagaaaaatgggtgttgaatgggctgagttaccgcaagaaatcatagaatcaatctcgaaaaggttaacaatctacgccgactatattcgattccga |
53696129 |
T |
|
| Q |
464 |
tgtgggtgccgcacctggaattcctccgtccctaa |
498 |
Q |
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|||| || ||||||||||||||||| |||||||| |
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| T |
53696130 |
tgtgtctgtcgcacctggaattcctctgtccctaa |
53696164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 654 - 787
Target Start/End: Complemental strand, 53695738 - 53695601
Alignment:
| Q |
654 |
acaaaaagtataccaagattctttttaaaaacttctt--cacaataaacacgataaagtcaaaataaactagccgtaacagtaatgaaaa-tcaatcata |
750 |
Q |
| |
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||||||| ||||||| ||| |||||| |||||||| ||||| |||||| |||||||| ||||||||| | ||||| ||||| |||| ||||||||| |
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| T |
53695738 |
acaaaaattataccatgatgttttttagaaacttctctccacaacaaacactgtaaagtcagaataaactaactgtaacggtaataaaaaatcaatcata |
53695639 |
T |
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| Q |
751 |
gtagattagttgatcctgaaattca-taaatacttatc |
787 |
Q |
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| T |
53695638 |
gtagattagttgatcctgacattcacaaaatacttatc |
53695601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 461
Target Start/End: Complemental strand, 53705223 - 53705165
Alignment:
| Q |
403 |
agaaatcatagaatcaatctctaaaaggttaacaatctacgccgactatatccgattcc |
461 |
Q |
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|||||||||| || ||||||| ||| |||||||||||||||||| || |||||||||| |
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| T |
53705223 |
agaaatcatacaaacaatctcacaaaagttaacaatctacgccgattacatccgattcc |
53705165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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