View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_low_101 (Length: 241)

Name: NF0829_low_101
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_low_101
NF0829_low_101
[»] chr7 (1 HSPs)
chr7 (130-223)||(21477467-21477560)
[»] chr4 (10 HSPs)
chr4 (164-201)||(27508839-27508876)
chr4 (164-196)||(27479004-27479036)
chr4 (164-196)||(27486064-27486096)
chr4 (154-196)||(27489937-27489979)
chr4 (164-201)||(27524511-27524548)
chr4 (164-196)||(27468448-27468480)
chr4 (164-196)||(27475700-27475732)
chr4 (164-192)||(27497447-27497475)
chr4 (164-223)||(27506685-27506745)
chr4 (164-196)||(27514878-27514910)
[»] chr8 (1 HSPs)
chr8 (167-200)||(21608247-21608280)
[»] chr3 (2 HSPs)
chr3 (167-200)||(38032272-38032305)
chr3 (167-200)||(50913486-50913519)
[»] chr5 (1 HSPs)
chr5 (164-196)||(1754675-1754707)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 21477560 - 21477467
Alignment:
Q  130 acaagcgtaacaagagtaccacagagaaataaggaagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcat 223  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21477560 acaagcgtaacaagagtaccggagagaaataaggaagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcat 21477467  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 27508839 - 27508876
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaaatgac 201  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  27508839 aagggctatgttgcagtgtatgttggagagaaactgac 27508876  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27479036 - 27479004
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||||||||||||||||||||||||||||||||    
T  27479036 aagggctatgttgcagtgtatgttggagagaaa 27479004  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27486096 - 27486064
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||||||||||||||||||||||||||||||||    
T  27486096 aagggctatgttgcagtgtatgttggagagaaa 27486064  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 27489937 - 27489979
Alignment:
Q  154 agaaataaggaagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||| |||| ||||||||||||| |||||||||||||||||||    
T  27489937 agaagtaagaaagggctatgttgtagtgtatgttggagagaaa 27489979  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 27524511 - 27524548
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaaatgac 201  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  27524511 aagggctacgttgcagtgtatgttggagagaaactgac 27524548  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27468480 - 27468448
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||||||||||||| ||||||||||||||||||    
T  27468480 aagggctatgttgcggtgtatgttggagagaaa 27468448  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27475732 - 27475700
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||||||||||||| ||||||||||||||||||    
T  27475732 aagggctatgttgccgtgtatgttggagagaaa 27475700  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 27497475 - 27497447
Alignment:
Q  164 aagggctatgttgcagtgtatgttggaga 192  Q
    |||||||||||||||||||||||||||||    
T  27497475 aagggctatgttgcagtgtatgttggaga 27497447  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 27506685 - 27506745
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcat 223  Q
    ||||||||||||||||| ||||| |||||||||  ||| | |||||| |||||||||||||    
T  27506685 aagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcat 27506745  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 27514878 - 27514910
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    |||||||||||||| ||||||||||||||||||    
T  27514878 aagggctatgttgcggtgtatgttggagagaaa 27514910  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 21608247 - 21608280
Alignment:
Q  167 ggctatgttgcagtgtatgttggagagaaaatga 200  Q
    |||||| |||||||||||||||||||||||||||    
T  21608247 ggctatcttgcagtgtatgttggagagaaaatga 21608280  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 38032272 - 38032305
Alignment:
Q  167 ggctatgttgcagtgtatgttggagagaaaatga 200  Q
    |||||| |||||||||||||||||||||||||||    
T  38032272 ggctatcttgcagtgtatgttggagagaaaatga 38032305  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 50913486 - 50913519
Alignment:
Q  167 ggctatgttgcagtgtatgttggagagaaaatga 200  Q
    |||||| |||||||||||||||||||||||||||    
T  50913486 ggctatcttgcagtgtatgttggagagaaaatga 50913519  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 1754675 - 1754707
Alignment:
Q  164 aagggctatgttgcagtgtatgttggagagaaa 196  Q
    ||||||||||||||||||||| |||||||||||    
T  1754675 aagggctatgttgcagtgtatattggagagaaa 1754707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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