View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_106 (Length: 222)
Name: NF0829_low_106
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_106 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4075284 - 4075390
Alignment:
| Q |
1 |
gagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaaggctcccattgcttcctatagatagatggatggccttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
4075284 |
gagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttagaggctcccattgcttcctatagatagatggatgaccttct |
4075383 |
T |
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| Q |
101 |
tttctgt |
107 |
Q |
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||||||| |
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| T |
4075384 |
tttctgt |
4075390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 25824872 - 25824770
Alignment:
| Q |
5 |
caccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaaggctcccattgcttcctatagatagatggatggccttcttttc |
104 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| || |||| |||| ||| ||||| || |||||||||||||| || || |||||||||| |
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| T |
25824872 |
caccaatgtatgcaatctgcataaccatttggatttgatatctgttcttgagttagaggttcccactgtttcctatagatagaagggtgaccttcttttc |
25824773 |
T |
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| Q |
105 |
tgt |
107 |
Q |
| |
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||| |
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|
| T |
25824772 |
tgt |
25824770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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