View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_11 (Length: 488)
Name: NF0829_low_11
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_11 |
 | |
|
| [»] scaffold0154 (2 HSPs) |
| | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0154 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 24734 - 24292
Alignment:
| Q |
9 |
caacaaaatctacatagaaaccaaaacaacaattctcagatggattgggtacgaggaaaaacagttggaagaggaagctttgcaactgttaatttagcta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24734 |
caacaaaatctacatagaaaccaaaacaacaattctcagatggattgggtacgaggaaaaacagttggaagaggaagctttgcaactgttaatttagcta |
24635 |
T |
|
| Q |
109 |
tacctaaagccaattcatattcaaccccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24634 |
tacctaaagccaattcatattcaaccccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaact |
24535 |
T |
|
| Q |
209 |
tggttcttgtcaaagaatcattccttgtttcggagatgattatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacgga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24534 |
tggttcttgtcaaagaatcattccttgtttcggagatgattatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggccgga |
24435 |
T |
|
| Q |
309 |
acactctccgatcaggtgaaactcaatggtggccggataccggagcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
24434 |
acactctccgatcaggtgaaactcaatggtggccggataccggagcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatc |
24335 |
T |
|
| Q |
409 |
gcaatggattcgttcattgtgatataaagcttcaaaatatttt |
451 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24334 |
gcaatggatttgttcattgtgatataaagcttcaaaatatttt |
24292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 15293 - 14872
Alignment:
| Q |
30 |
caaaacaacaattctcagatggattgggtacgaggaaaaacagttggaagaggaagctttgcaactgttaatttagctatacctaaagccaattcatatt |
129 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||| |
|
|
| T |
15293 |
caaaacaacaattgcaagatggattgggtacgaggagaaactgttggaagaggaagctttgcaactgttaatttagttatacccaaaagcaattcaaatt |
15194 |
T |
|
| Q |
130 |
caaccccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggttcttgtcaaagaatcat |
229 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
15193 |
ccactccgacagccgtcaaaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaatatgttcttcatcaacttggttcttgtcaaagaattat |
15094 |
T |
|
| Q |
230 |
tccttgtttcggagatgattatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacggaacactctccgatcaggtgaaa |
329 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | || | |||||||||||||||||| |
|
|
| T |
15093 |
tccttgttttggagatgattacacttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggttctctctccgatcaggtgaaa |
14994 |
T |
|
| Q |
330 |
ctcaatggtggccggataccggagcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatcgcaatggattcgttcattgtg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
14993 |
ctcaatggtggccggataccggagcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatcgcaatggatttgttcattgtg |
14894 |
T |
|
| Q |
430 |
atataaagcttcaaaatatttt |
451 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14893 |
atataaagcttcaaaatatttt |
14872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 48 - 451
Target Start/End: Original strand, 61 - 464
Alignment:
| Q |
48 |
atggattgggtacgaggaaaaacagttggaagaggaagctttgcaactgttaatttagctatacctaaagccaattcatattcaaccccgacagccgtca |
147 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||| || ||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
61 |
atggattgggtacgaggagaagctgttggaagaggtagttttgcaactgttaatttagttatacccaaaggaaattcatattcaactccgacagccgtca |
160 |
T |
|
| Q |
148 |
aaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggttcttgtcaaagaatcattccttgtttcggagatga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
161 |
aaacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggttcttgtcaaagaattattccttgttttggagatga |
260 |
T |
|
| Q |
248 |
ttatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacggaacactctccgatcaggtgaaactcaatggtggccggata |
347 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
261 |
ttacacttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggtactctctccgatcaggtgaaactcaatggtggccggata |
360 |
T |
|
| Q |
348 |
ccggagcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatcgcaatggattcgttcattgtgatataaagcttcaaaata |
447 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
361 |
ccggagcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatcgcaatggatttgttcattgtgatataaagcttcaaaata |
460 |
T |
|
| Q |
448 |
tttt |
451 |
Q |
| |
|
|||| |
|
|
| T |
461 |
tttt |
464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 959 times since January 2019
Visitors: 6135