View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_115 (Length: 201)
Name: NF0829_low_115
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 5244393 - 5244339
Alignment:
| Q |
57 |
accaatattcctacgacaatctagttttgagacattgaagtctgctaacataaga |
111 |
Q |
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| T |
5244393 |
accaatattcctacgacaatctagttttgagacattgaagtttgctagcataaga |
5244339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5244428 - 5244393
Alignment:
| Q |
1 |
acacaacacaacaagacacacttctatcattggtta |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5244428 |
acacaacacaacaagacacacttctatcattggtta |
5244393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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