View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_14 (Length: 476)
Name: NF0829_low_14
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 8255500 - 8255940
Alignment:
| Q |
13 |
aatatactatttgaacattgcttcttatcatactatgaacaatttcctaaattaatctcatcatatgcgtgtgcgcgcgagtttnnnnnnnnnnnnnnnn |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8255500 |
aatagactatttgaacattgcttcttatcatactattaacaatttcctaaattaatctcatcatatgtgtgtgcgcgcgagttatgtgtgtgtgttgtgt |
8255599 |
T |
|
| Q |
113 |
nnnnncaaatataacaaaacacattaaagtaaaacttaattggtgattgacaaaaggacactaaagatgattattacacttaattggtgtacgaattaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8255600 |
gtgtgcaaatataacaaaacacattaaagtaaaacttaattggtgattgacaaaaggacactaaagatgattattacacttaattggtgtgcgaattaag |
8255699 |
T |
|
| Q |
213 |
aattttctttaattgagtcaattacaatttttaagaattgtttagccttccttgaccagctctagcaaatattaaaatttctactaaaacaataaatacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8255700 |
aattttctttaattgagtcaattacaatttttaagaattgtttagccttccttgaccagctctagcaaatattaaaatttctactaaaacaataaatacc |
8255799 |
T |
|
| Q |
313 |
cactatcgagttgtccttatcccctnnnnnnntcaaagttggtcttatataatctcatccattgaa-attttttactagat-----gtatatgactataa |
406 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||| || |||||||||||||| |
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| T |
8255800 |
cactatcgagttgtccttatcccctaaaaaaaatcaagttgttcttatatgatctcatccattgaattttttttactatatgtagagtatatgactataa |
8255899 |
T |
|
| Q |
407 |
attaacgatgtcaatggacaggatttagggagatatggcat |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8255900 |
attaacgatgtcaatggacaggatttagggagatatggcat |
8255940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 8268918 - 8269358
Alignment:
| Q |
13 |
aatatactatttgaacattgcttcttatcatactatgaacaatttcctaaattaatctcatcatatgcgtgtgcgcgcgagtttnnnnnnnnnnnnnnnn |
112 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8268918 |
aatagactatttgaccattgcttcttatcatactattaacaatttcctaaattaatctcatcatatgtgtgtgcgcgcgagttatgtgtgtgtgttgtgt |
8269017 |
T |
|
| Q |
113 |
nnnnncaaatataacaaaacacattaaagtaaaacttaattggtgattgacaaaaggacactaaagatgattattacacttaattggtgtacgaattaag |
212 |
Q |
| |
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|||||||| |||| | | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
8269018 |
gtgtgcaaatataccaaacccccttaaagtaaaacttaattggtgattgacaaaaggcccctaaagatgattattacacttaattggtgtgcgaattaag |
8269117 |
T |
|
| Q |
213 |
aattttctttaattgagtcaattacaatttttaagaattgtttagccttccttgaccagctctagcaaatattaaaatttctactaaaacaataaatacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8269118 |
aattttctttaattgagtcaattacaatttttaagaattgtttagccttccttgaccagctctagcaaatattaaaatttctactaaaccaataaatacc |
8269217 |
T |
|
| Q |
313 |
cactatcgagttgtccttatcccctnnnnnnntcaaagttggtcttatataatctcatccattgaa-attttttactagat-----gtatatgactataa |
406 |
Q |
| |
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||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||| || |||||||||||||| |
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|
| T |
8269218 |
cactatcgagttgtccttatcccctaaaaaaaatcaagttgttcttatatgatctcatccattgaattttttttactatatgtagagtatatgactataa |
8269317 |
T |
|
| Q |
407 |
attaacgatgtcaatggacaggatttagggagatatggcat |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8269318 |
attaacgatgtcaatggacaggatttagggagatatggcat |
8269358 |
T |
|
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