View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_15 (Length: 473)
Name: NF0829_low_15
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 134 - 445
Target Start/End: Complemental strand, 5789946 - 5789635
Alignment:
| Q |
134 |
aacaaccaagtctatatttttgttcatatttgtgtggctatagttggatttttcttggtaacattatcaactatggttatcaaactttgaacaagaaaca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5789946 |
aacaaccaagtctatatttttgttcatatttgtgtggctatagttggatttttcttggtaacattatcaactatggttatcaaactatgaacaagaaaca |
5789847 |
T |
|
| Q |
234 |
aatgtagattactacttcttattcatcttcacttccatttatcatctcttgtttcttttacaaactcaaataaaaaacaaaacttgtctcttgggttggt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5789846 |
aatgtagattactacttcttattcatcttcacttccatttatcatctcttgtttcttttacaaactcaaataaaaaacaaaacttgtctcttgggttggt |
5789747 |
T |
|
| Q |
334 |
tccaaattatatcaccnnnnnnnccgactagtccttgttcttgttcttgttccatccttcataaactgtttctgagttcaatatcaactttttcttcttc |
433 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5789746 |
tccaaattatatcaccaaaaaaaccaactagtccttgttcttgttcttgttccatccttcataaactgtttctgagttcaatatcaactttttcttcttc |
5789647 |
T |
|
| Q |
434 |
tactttgttcat |
445 |
Q |
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|||||||||||| |
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| T |
5789646 |
tactttgttcat |
5789635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 5790077 - 5789975
Alignment:
| Q |
11 |
cagagaggaaaagacagaaagtgcaacgtcagagtttaacagtagggttcccctttggtttgtggttttggacaagttca-ggattccctcttctcatcc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5790077 |
cagagaggaaaagacagaaagtgcaacgtcagagtttaacagtagggttcccctttggtttgtggttttggacaagttcagggattccctcttctcatcc |
5789978 |
T |
|
| Q |
110 |
aca |
112 |
Q |
| |
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||| |
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| T |
5789977 |
aca |
5789975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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