View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_16 (Length: 471)
Name: NF0829_low_16
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 38032639 - 38032215
Alignment:
| Q |
1 |
acacaaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38032639 |
acacaaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaa |
38032540 |
T |
|
| Q |
101 |
ttgtctcaactggtcaatcctactctcctatgttatcatccatatctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38032539 |
ttgtctcaactggtcaatcctactctcctatgttatcatccatatctatgttatcattcatacaaattagttatagcctgttcaagacagaagttgtatg |
38032440 |
T |
|
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38032439 |
taagaacatgtcttctttgcagggaattgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggc |
38032340 |
T |
|
| Q |
301 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38032339 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgatt |
38032240 |
T |
|
| Q |
401 |
gacttgcactaaatgatgatcgtct |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38032239 |
gacttgcactaaatgatgatcgtct |
38032215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Complemental strand, 38038900 - 38038480
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
38038900 |
aaattcacaagaatatagtttcataaggttctcatttatgatttcaacttaagaggaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgt |
38038801 |
T |
|
| Q |
105 |
ctcaactggtcaatcctactctcctatgttatcatccatatctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgtatgtaag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38038800 |
ctcaactggtcaatcctactctcctatgttatcattcctatctatgttatcaatcatacaaatttgttatatcctgttcaagacagaagctgtatgtaag |
38038701 |
T |
|
| Q |
205 |
aacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcat |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38038700 |
aacatgtcttccttgcagggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcat |
38038601 |
T |
|
| Q |
305 |
tcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgact |
404 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
38038600 |
tcaagaatgatattggaatcatgaaccttctcattttctctccaacatacactgcaagatggccttttgggacttccacttgtttgctagatgattgact |
38038501 |
T |
|
| Q |
405 |
tgcactaaatgatgatcgtct |
425 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38038500 |
tgcactaaatgatgatcgtct |
38038480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Complemental strand, 38027808 - 38027392
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgt |
104 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| || | ||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||| | |
|
|
| T |
38027808 |
aaattgacaagaatatagtttcttaaggttctcatctaagttttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaattat |
38027709 |
T |
|
| Q |
105 |
ctcaactggtcaatcctactctcctatgttatcatccatatctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgtatgtaag |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38027708 |
ctcaactggtcaatcctactatcctatgttatcattcctatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaa |
38027609 |
T |
|
| Q |
205 |
aacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcat |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38027608 |
aacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcat |
38027509 |
T |
|
| Q |
305 |
tcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgact |
404 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38027508 |
tcaagaatgatacgggaatcataaaccttctcattttctctccaacatacactgcaagatggccttttggaacttccacttgtttgctagatgattgact |
38027409 |
T |
|
| Q |
405 |
tgcactaaatgatgatc |
421 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
38027408 |
tgcactaagtgatgatc |
38027392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 425
Target Start/End: Complemental strand, 38035414 - 38034988
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgt |
104 |
Q |
| |
|
||||||| ||||||||| |||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
38035414 |
aaattcagaagaatataatttcttaaagttctcatttaagatttccacttaagaggaaacatcaaaattgacaaaaaaattgctgatgtacaaaaattgt |
38035315 |
T |
|
| Q |
105 |
ctcaactggtcaatcctactctcctat----gttatcatccatat--ctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgta |
198 |
Q |
| |
|
||||| |||||||||||| | |||||| |||||||| ||||| |||||| | ||||||| ||||| |||||| | |||||||| ||||| |||| |
|
|
| T |
38035314 |
ctcaattggtcaatcctattgtcctatatatgttatcattcatatgactatgttagcattcatgtgaattaattatagaccgttcaagagagaagctgta |
38035215 |
T |
|
| Q |
199 |
tgtaagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaag |
298 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38035214 |
tgtaagaatacgtcttccttgcagggaattgtgagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaag |
38035115 |
T |
|
| Q |
299 |
gctcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatga |
398 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38035114 |
gctcattcaagaatgatattggaatcatgaaccttcgcattttctctccaacatacaccgcaagatggccttttgggacttccacttgtttgttagatga |
38035015 |
T |
|
| Q |
399 |
ttgacttgcactaaatgatgatcgtct |
425 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38035014 |
ttgacttgcactaaatgatgatcgtct |
38034988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 50913818 - 50913433
Alignment:
| Q |
16 |
aatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtc |
115 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
50913818 |
aatatagtttcttaaggttatcatttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtc |
50913719 |
T |
|
| Q |
116 |
aatcctactctcctatgttatcatccatatctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgtatgtaagaacatgtcttc |
215 |
Q |
| |
|
| ||||||| ||||||||||||| ||||||| | | |||||| ||||||||| ||||| |||||||||||| | ||||| |
|
|
| T |
50913718 |
agtcctactatcctatgttatcac------------------tcataca--tgaattatagtctgttcaagtgagaagctgtatgtaagaagacatcttc |
50913639 |
T |
|
| Q |
216 |
tttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50913638 |
cttgcagggaattgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgat |
50913539 |
T |
|
| Q |
316 |
actggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatg |
415 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
50913538 |
attggaatcaagaacctcttcattttctctccaacatacactgcaagatagccttttgggacttccacttctttgctagatgattgacttgcactaaatg |
50913439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 50906613 - 50907027
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaag-aaatttctgatgtacaaaaattg |
103 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||| ||||| ||| || |||| ||||||| ||| |
|
|
| T |
50906613 |
aaattcacaagaatatagttttgtaagattctcatttctgatttccacttaagaggaaacatcaaaataaacaaaacaaaattgtgatatacaaaagttg |
50906712 |
T |
|
| Q |
104 |
tctcaactggtcaatcctactctcctatgttatcatccatatctatgtaatcattca-tacaaatt-agttatagcctgttcaagacagaagttgtatgt |
201 |
Q |
| |
|
|||||| | |||||||||| | | ||||||||| | ||| | || | | | | || |||| | |||||| | ||||||| |||||||||||| |
|
|
| T |
50906713 |
tctcaagtagtcaatcctattgtgttatgttatcgt---tat-tctgaacttttgcggtatgaatttatttataggccgttcaagcgggaagttgtatgt |
50906808 |
T |
|
| Q |
202 |
aagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggct |
301 |
Q |
| |
|
|| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | | ||||||||||||| |||||| |
|
|
| T |
50906809 |
aaaaacacatcttccttgcacggaattgtaagaccacccattggatgacagtaacggaattcctcttcggcttgacgcaacaattcttgaaatgaaggct |
50906908 |
T |
|
| Q |
302 |
cattcaagaatgatactggaatcataaaccttctcatttt-ctctcc-aacatacactgcaagatagccttttggaacttccacttgtttgatagatgat |
399 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||||||| |||||| ||||||||| |||| |||||||||||| || |||||||||||| |||| ||| |
|
|
| T |
50906909 |
cattcaagaatgacactggaatcaaaaacc-tctcattttcctctcctaacatacaccgcaaaatagccttttgggacgtccacttgtttgctagacgat |
50907007 |
T |
|
| Q |
400 |
tgacttgcactaaatgatga |
419 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
50907008 |
tgacttgcactaaatgatga |
50907027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 38042108 - 38041873
Alignment:
| Q |
190 |
gaagttgtatgtaagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattctt |
289 |
Q |
| |
|
||||||||| |||| |||| ||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
38042108 |
gaagttgtacgtaaaaacacatcttccttgcacggaattgtaagaccacccatttgatgacagtaaccgaattcctcttcagcttggctcaacaattctt |
38042009 |
T |
|
| Q |
290 |
gaaataaaggctcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgttt |
389 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| || | |||||||||||| ||||||| |||||| |
|
|
| T |
38042008 |
gaaacaaaggctcattcaagaatgctactggaatcaagaacctcttcatttcctctccaacatacaccgctaaatagccttttgggacttccatttgttt |
38041909 |
T |
|
| Q |
390 |
gatagatgattgacttgcactaaatgatgatcgtct |
425 |
Q |
| |
|
| | ||||| |||| |||| |||||||||||||||| |
|
|
| T |
38041908 |
gctggatgactgacctgcagtaaatgatgatcgtct |
38041873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 421
Target Start/End: Original strand, 55082716 - 55082891
Alignment:
| Q |
228 |
tgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatactggaatcata |
327 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55082716 |
tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatcagg |
55082814 |
T |
|
| Q |
328 |
aaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatc |
421 |
Q |
| |
|
||||| ||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55082815 |
aacctcttcattttctctccaacataaacagcaatata-----------------cttgtttgatagatgattgacttgcactaaatgatgatc |
55082891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 55082565 - 55082657
Alignment:
| Q |
30 |
aggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtcaatccta |
122 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |||||||| |||||||||||| ||||||||| || ||||||||||| |||||||||| |
|
|
| T |
55082565 |
aggttctcatttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcaactagtcaatccta |
55082657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 55086847 - 55086775
Alignment:
| Q |
190 |
gaagttgtatgtaagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaatt |
262 |
Q |
| |
|
|||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
55086847 |
gaagttgtatgtaaaaatacatcttctttgcagctaattgtaagaccacccattggatgacagtaactgaatt |
55086775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 55084809 - 55084770
Alignment:
| Q |
335 |
tcattttctctccaacatacactgcaagatagccttttgg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
55084809 |
tcattttctctccaacatacactgcaagacacccttttgg |
55084770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 38042277 - 38042241
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcattt |
41 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38042277 |
aaattcacaagaatatagttttgtaaggttctcattt |
38042241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Complemental strand, 21608610 - 21608190
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
21608610 |
aaattcacaagaatatagtttcataaggttctcatttatgatttcaacataagaggaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgt |
21608511 |
T |
|
| Q |
105 |
ctcaactggtcaatcctactctcctatgttatcatccatatctatgtaatcattcatacaaattagttatagcctgttcaagacagaagttgtatgtaag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21608510 |
ctcaactggtcaatcctactctcctatgttatcatccctatctatgttatcaatcatacaaatttgttatatcctgttcaagacagaagctgtatgtaag |
21608411 |
T |
|
| Q |
205 |
aacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcat |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21608410 |
aacatgtcttccttgcagggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcat |
21608311 |
T |
|
| Q |
305 |
tcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgact |
404 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21608310 |
tcaagaatgatattggaatcatgaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgact |
21608211 |
T |
|
| Q |
405 |
tgcactaaatgatgatcgtct |
425 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21608210 |
tgcactaaatgatgatcgtct |
21608190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 21633938 - 21633902
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcattt |
41 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21633938 |
aaattcacaagaatatagttttgtaaggttctcattt |
21633902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 27414304 - 27414466
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| || ||||| ||||| | ||| | || |||||||||||| | || | |||||| ||||||| |
|
|
| T |
27414304 |
tgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatac |
27414403 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
27414404 |
aggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcacttc |
27414466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 27424514 - 27424676
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||| || |||| ||||||| ||| | ||||||||||||||| |||| | |||||| ||||||| |
|
|
| T |
27424514 |
tgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatac |
27424613 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27424614 |
tggaatcacaaaccgcctcatttgatctccaacatagactgcgagatagccttttgggacttc |
27424676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 380
Target Start/End: Complemental strand, 27567395 - 27567233
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||| ||||| ||||| | ||| | || ||||||||||| | || | |||||| ||||||| |
|
|
| T |
27567395 |
tgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaagtatgatac |
27567296 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27567295 |
tggaatcacgaaccgtctcattctatctccaacatagactgcgagatagccttttgggacttc |
27567233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 27411456 - 27411618
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| ||| || ||||| ||||| ||||| | || ||||||||||| | || | |||||| ||||||| |
|
|
| T |
27411456 |
tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgatac |
27411555 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27411556 |
tggaatcacgaaccgtctcattctatctccaacatagactgcgagatagccttttgggacttc |
27411618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 383
Target Start/End: Complemental strand, 27487140 - 27486958
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggc |
300 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||| ||| | |||| |||||||||||| | | |||||||||||| | || |
|
|
| T |
27487140 |
taagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggt |
27487041 |
T |
|
| Q |
301 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccac |
383 |
Q |
| |
|
| || ||| |||||| || |||| ||||| ||||||||||||| || |||||||| ||||| || |||||||| ||||| |
|
|
| T |
27487040 |
tggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttggaacgtccac |
27486958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 380
Target Start/End: Original strand, 27419076 - 27419233
Alignment:
| Q |
223 |
ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatactggaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||| ||||| | ||| | || ||||||||||| | |||| |||| |||||||||||| |
|
|
| T |
27419076 |
ggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaa |
27419175 |
T |
|
| Q |
323 |
tcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||| |||| |||||| | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27419176 |
tcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttc |
27419233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 27526095 - 27526271
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggc |
300 |
Q |
| |
|
|||||| | ||||||| |||| ||||| || ||||||||| |||||||| ||| | |||| || ||||||||||| | ||||||||| ||| | | |
|
|
| T |
27526095 |
taagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtt |
27526194 |
T |
|
| Q |
301 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaac |
377 |
Q |
| |
|
| |||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
27526195 |
tggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaac |
27526271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 383
Target Start/End: Original strand, 27523386 - 27523568
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggc |
300 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||||||||||||||||| ||| | |||| || || |||| ||| | ||||||||| ||| ||| |
|
|
| T |
27523386 |
taagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattcttggaatgaagtt |
27523485 |
T |
|
| Q |
301 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccac |
383 |
Q |
| |
|
| ||||| ||||||| ||||||| ||||| ||||||||||||| || |||||||| |||||||| |||||||| ||||| |
|
|
| T |
27523486 |
tggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagccctttggaacgtccac |
27523568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 27422000 - 27422097
Alignment:
| Q |
283 |
aattcttgaaataaaggctcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
|||||||||||||| || | |||||| ||||||||||||||| |||| | ||||| | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27422000 |
aattcttgaaataatggttggttcaagtatgatactggaatcacgaaccgtttcattctatctccaacatagactgcgagatagccttttgggacttc |
27422097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 27476843 - 27476662
Alignment:
| Q |
202 |
aagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggct |
301 |
Q |
| |
|
||||| ||||||||| |||| ||||| || |||||||||||||||||| ||| | |||| || ||| |||||| |||| |||||| ||| | | | |
|
|
| T |
27476843 |
aagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggttt |
27476744 |
T |
|
| Q |
302 |
cattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttccac |
383 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| |||||||||| |||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
27476743 |
ggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttggaacgtccac |
27476662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 27571758 - 27571601
Alignment:
| Q |
223 |
ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatactggaa |
322 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| || ||||| ||||| | ||| | || ||||||||||| | |||| |||| |||||||||||| |
|
|
| T |
27571758 |
ggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaa |
27571659 |
T |
|
| Q |
323 |
tcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||| |||| |||||| | ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27571658 |
tcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttc |
27571601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 27502812 - 27502963
Alignment:
| Q |
223 |
ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatactggaa |
322 |
Q |
| |
|
||||| |||||||||||||||||||| ||| || ||||| || |||||||||| ||||| ||||||||| ||| | |||||| |||| | ||||| |
|
|
| T |
27502812 |
ggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaa |
27502911 |
T |
|
| Q |
323 |
tcataaaccttctcattttctctccaacatacactgcaagatagccttttgg |
374 |
Q |
| |
|
||| ||||| |||| |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
27502912 |
tcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttgg |
27502963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 374
Target Start/End: Original strand, 27559240 - 27559396
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| || || || ||||| | |||||| | || | ||||||| ||| | |||||| ||||| | |
|
|
| T |
27559240 |
tgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaat |
27559339 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttgg |
374 |
Q |
| |
|
||||||| ||| || ||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
27559340 |
aggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgg |
27559396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 27556379 - 27556541
Alignment:
| Q |
218 |
tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatac |
317 |
Q |
| |
|
|||| |||||||| ||||||||||| | |||| ||| || ||||| ||||| ||||| || |||||||||||| |||| | ||||| ||||| | |
|
|
| T |
27556379 |
tgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaat |
27556478 |
T |
|
| Q |
318 |
tggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||| ||| | ||||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
27556479 |
gggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttc |
27556541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 27479004 - 27479045
Alignment:
| Q |
339 |
tttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
27479004 |
tttctctccaacatacactgcaacatagccctttggaacttc |
27479045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 27486064 - 27486105
Alignment:
| Q |
339 |
tttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
27486064 |
tttctctccaacatacactgcaacatagccctttggaacttc |
27486105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 27513769 - 27513932
Alignment:
| Q |
211 |
tcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaaga |
310 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||||||||| ||| | ||| |||||||||||| | | ||||||||| || | | | |||||| |
|
|
| T |
27513769 |
tcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagt |
27513868 |
T |
|
| Q |
311 |
atgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttgg |
374 |
Q |
| |
|
|||||| ||| |||| ||||| ||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
27513869 |
atgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg |
27513932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 27446219 - 27446125
Alignment:
| Q |
286 |
tcttgaaataaaggctcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||||| |||| | |||||| ||||| |||||||| ||| | ||||||| ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
27446219 |
tcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgggacttc |
27446125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 27557636 - 27557482
Alignment:
| Q |
211 |
tcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaaga |
310 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||||||||| ||| | |||| || |||||||| | ||||||||||||||| | || | || ||| |
|
|
| T |
27557636 |
tcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaagt |
27557537 |
T |
|
| Q |
311 |
atgatactggaatcataaaccttctcattttctctccaacatacactgcaagata |
365 |
Q |
| |
|
|||| | ||| |||| |||||| |||||| |||||||||||| || |||||||| |
|
|
| T |
27557536 |
atgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagata |
27557482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 27600700 - 27600662
Alignment:
| Q |
211 |
tcttctttgcagggaattgtaagaccacccattggatga |
249 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
27600700 |
tcttctttgcaaggaattgtgagaccacccattggatga |
27600662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 374
Target Start/End: Complemental strand, 27480058 - 27479885
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggc |
300 |
Q |
| |
|
|||||| ||||||||| |||| ||||| || |||||||||||||||||| ||| | |||| || ||||||||| | | ||| | ||| ||| | | |
|
|
| T |
27480058 |
taagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtt |
27479959 |
T |
|
| Q |
301 |
tcattcaagaatgatactggaatcataaaccttctcattttctctccaacatacactgcaagatagccttttgg |
374 |
Q |
| |
|
| |||||| ||||||| ||||||| ||| | ||||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
27479958 |
tggttcaagtatgatacaggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttgg |
27479885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 27497447 - 27497484
Alignment:
| Q |
343 |
tctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
27497447 |
tctccaacatacactgcaacatagccctttggaacttc |
27497484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 27498572 - 27498524
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatga |
249 |
Q |
| |
|
|||||||||||||||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
27498572 |
taagaacatgtcttctccgcaaggaatagtgagaccacccattggatga |
27498524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 27502118 - 27502166
Alignment:
| Q |
201 |
taagaacatgtcttctttgcagggaattgtaagaccacccattggatga |
249 |
Q |
| |
|
|||||| ||||||||| |||| ||||| || |||||||||||||||||| |
|
|
| T |
27502118 |
taagaaaatgtcttctctgcaaggaatagttagaccacccattggatga |
27502166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 27566072 - 27566116
Alignment:
| Q |
339 |
tttctctccaacatacactgcaagatagccttttggaacttccac |
383 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
27566072 |
tttctctccaacatacactgcaagatatccctttggcacgtccac |
27566116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 3072573 - 3072451
Alignment:
| Q |
5 |
aaattcacaagaatatagtttcataaggttctcatttatgatttccacctaagaggaaacatcaaaattgac-aaagaaatttctg--atgtacaaaaat |
101 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||| || |||||||||| || ||| |||||| | |
|
|
| T |
3072573 |
aaattcacaagaatatagttttgtacggttctcatttctgatttccactcaagaggaaacatcaaaataaacaaaagaaatttgtgatatgcacaaaagt |
3072474 |
T |
|
| Q |
102 |
tgtctcaactggtcaatcctact |
124 |
Q |
| |
|
| |||||||| || ||||||||| |
|
|
| T |
3072473 |
tctctcaactagttaatcctact |
3072451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 3072362 - 3072300
Alignment:
| Q |
363 |
atagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatcgtct |
425 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3072362 |
atagccatttggggcttcctcttgtttgctagatgattgacttgcactaaatgatgatcgtct |
3072300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 21477490 - 21477523
Alignment:
| Q |
335 |
tcattttctctccaacatacactgcaagatagcc |
368 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
21477490 |
tcattttctctccaacatacactgcaacatagcc |
21477523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 1754707 - 1754666
Alignment:
| Q |
339 |
tttctctccaacatacactgcaagatagccttttggaacttc |
380 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
1754707 |
tttctctccaatatacactgcaacatagccctttggaacttc |
1754666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 1755994 - 1756102
Alignment:
| Q |
217 |
ttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgata |
316 |
Q |
| |
|
||||| |||||||| |||||| | |||||||| ||| | ||||| |||||| ||||||| || |||||||||||| |||| | ||||||| |||||| |
|
|
| T |
1755994 |
ttgcatggaattgtgagaccaacagttggatgatcatatctgaattgctcttctgcttggcatagtaattcttgaaattaaggttgattcaagtatgata |
1756093 |
T |
|
| Q |
317 |
ctggaatca |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
1756094 |
ttgaaatca |
1756102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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