View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_22 (Length: 454)
Name: NF0829_low_22
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 341
Target Start/End: Original strand, 30537125 - 30537437
Alignment:
| Q |
30 |
aaatttagtatttgtttgatattttttgaataaaaataagagtaattataatacgctaatttaaatttattataaaattcatgtactggataaatatttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30537125 |
aaatttagtatttgtttgatattttttgaataaaaataagaataattataatatgctaatttaaatttattataaaattcatgtacgggataaatatttg |
30537224 |
T |
|
| Q |
130 |
tgatcaattaattagttaaaattaaagttttttaatatggtcaaaataaa-aggtgagaataattataatatattaactataannnnnnncacacttcaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
30537225 |
tgatcaattaattagttaaaattaaagttttttaatatggtcaaaataaagaaataagaataattataatatactaactataatttttttcacacttcaa |
30537324 |
T |
|
| Q |
229 |
ttttatcaagttgttttcctagaaacaagtcattaagaggttgttgaagcttataatttatgcacggaataaatatttgtcaataatcaattagttcaat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
30537325 |
ttttatcaagttgttttcctagaaacaagtcattaagaggttgttgaagcttataatttatgcacggaacaaatatttgtcactaatcaattagttcaat |
30537424 |
T |
|
| Q |
329 |
gtcccttaagacc |
341 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30537425 |
gtcccttaagacc |
30537437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 30537487 - 30537539
Alignment:
| Q |
393 |
atagtattctaaataaaaatgagaatactataacatattaatttgagtataat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30537487 |
atagtattctaaataaaaatgagaatactataacatattaatttgagtataat |
30537539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 944 times since January 2019
Visitors: 6134