View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_24 (Length: 434)
Name: NF0829_low_24
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 405
Target Start/End: Complemental strand, 2655642 - 2655245
Alignment:
| Q |
8 |
ccaacaatatccatcagaaagtgattgttcatcaagagtgagttcaaaagtcccattcactccaatcagaaaaaggctaaatcctttcacaaagtcaaag |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655642 |
ccaaccatatccatcagaaagtgattgttcatcaagagtgagttcaaaagtcccattcactccaatcagaaaaaggctaaatcctttcacaaagtcaaag |
2655543 |
T |
|
| Q |
108 |
aaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgaattttccaacacaacaaaaggtgctgacattgtttctgaatttgtcaatagagaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655542 |
aaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgacttttccaacacaacaaaaggtgctgacattgtttctgaatttgtcaatagagaaa |
2655443 |
T |
|
| Q |
208 |
ttaaggattctagtctagcatgctcacctgttcatttgcatggcaatctcaagatgaaaaacaaacaaggacttccttattttgagtttaaggtaaattc |
307 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655442 |
ttaaggattctggtctagcatgctcacatgttcatttgcatggcaatctcaagatgaaaaacaaacaaggacttccttattttgagtttaaggtaaattc |
2655343 |
T |
|
| Q |
308 |
ccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgggtatatacctttcactcttttgatactagaacgaagaataatg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2655342 |
ccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgggtatatacctttcactcttttcatactagaacgaagagtaatg |
2655245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 2696063 - 2696118
Alignment:
| Q |
115 |
caagaaacatggcttgtcaaaaatctttgttgaatgaattttccaacacaacaaaa |
170 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||| |
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|
| T |
2696063 |
caagaaacatggtttgtcaaaaacctttgttgaatgatttttccaacacaaaaaaa |
2696118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 376
Target Start/End: Original strand, 40964835 - 40965036
Alignment:
| Q |
175 |
ctgacattgtttctgaatttgtcaatagagaaattaaggattctagtctagcatgctcacctgttcatttgcatggcaatctcaagatgaaaaacaaaca |
274 |
Q |
| |
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|||||||| ||||||| ||| |||| |||||||| ||| |||| || |||||| || || ||||| |||| || ||||||||| | |||||||| | |
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| T |
40964835 |
ctgacattatttctgagtttatcaacagagaaatcaagtattcaggtatagcatcgtcgccggttcacctgcacggtaatctcaagttcgaaaacaaaaa |
40964934 |
T |
|
| Q |
275 |
aggacttccttattttgagtttaaggtaaattcccctgaagatgtctttgttgcaaagacatggagagtaggtaatgctttaaattgggtatataccttt |
374 |
Q |
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||| | |||| ||||||||| ||||| || | ||||||||||| ||||| || |||||||||||||||||||| | ||| |||||||||||||| ||| |
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| T |
40964935 |
tggaatgcctttttttgagttcaaggtgaagtgtcctgaagatgtgtttgtggccaagacatggagagtaggtaacggtttcaattgggtatatacattt |
40965034 |
T |
|
| Q |
375 |
ca |
376 |
Q |
| |
|
|| |
|
|
| T |
40965035 |
ca |
40965036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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