View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_26 (Length: 427)
Name: NF0829_low_26
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 95 - 419
Target Start/End: Complemental strand, 34285421 - 34285098
Alignment:
| Q |
95 |
acatgaacagattaatgttggaagacttgataatgtttgtactagtggtacgtaaaattagtaacnnnnnnnnnnnnnnca--atttattataattctag |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
34285421 |
acatgaacagattaatgttggaagacttgataatgtttgtactagtggtacgtaaaattagtaactatatatatatatacacaatttattataattctag |
34285322 |
T |
|
| Q |
193 |
atgcagattattataagaagcaattgttacagtatttgaagacaatacttgtgaagctcacatgcaacgttaatgcttgtgacagtgattcctataacat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34285321 |
atgcagattattataagaagcaattgttacagtatttgaagacaatacttgtgaagctcacatgcaacgttaatgcttgtgacagtgattcctataacat |
34285222 |
T |
|
| Q |
293 |
gtatgcaacaattagctgtttttgagtgctaattaaaagtgtttgtgtttgctaatgaattattacagtcttacatgatgctatatataatacaactaag |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
34285221 |
gtatgcaacaattagctgtttttgagtgctaattaaaactg-ttgtgtttgctaatgaattattacactcttacatgatgc--tatataatacaactaag |
34285125 |
T |
|
| Q |
393 |
caaccagcactattcaaggtctctgct |
419 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
34285124 |
caaccagcactattcaaggtttctgct |
34285098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 334 times since January 2019
Visitors: 6128