View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_low_28 (Length: 414)

Name: NF0829_low_28
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_low_28
NF0829_low_28
[»] chr6 (4 HSPs)
chr6 (33-281)||(26563924-26564172)
chr6 (34-155)||(26551791-26551912)
chr6 (327-414)||(26564218-26564305)
chr6 (34-154)||(26558437-26558557)
[»] chr1 (1 HSPs)
chr1 (34-155)||(50935770-50935891)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 26563924 - 26564172
Alignment:
Q  33 atgttcgcgtactccatcccaactccaatatctaaaacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctggg 132  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26563924 atgttcgcgtgctccatcccaactccaatatctaaaacagttataccattcaaaattcggtgtttatctcgagcatgaaatcgaatcaaacacttctggg 26564023  T
Q  133 gatcttcaaaaggtgaggtttctgtgtaaatgccatttatgtcgagccagtactagaaaaagttgaaatagcaatggaaatttaaagatgaaaaatgtta 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26564024 gatcttcaaaaggtgaggtttctgtgtaaatgccatttatgtcgagccagtactagaaaaagttgaaatagcaatggaaatttaaagatgaaaaatgtta 26564123  T
Q  233 aattcatctctaattaggccgtcgtcgataagtattagtgggtgaccaa 281  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  26564124 aattcatttctaattacgtcgtcgtcgataagtattagtgggtgaccaa 26564172  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 26551791 - 26551912
Alignment:
Q  34 tgttcgcgtactccatcccaactccaatatctaaaacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctgggg 133  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||| || ||||    
T  26551791 tgttcacgtactccgtcccaacttcaatatctaaaacagttataccattcaaagtttggcgtttatctcgagcatgaaattgaattaaacacatccgggg 26551890  T
Q  134 atcttcaaaaggtgaggtttct 155  Q
    ||| ||||||||||||||||||    
T  26551891 atcatcaaaaggtgaggtttct 26551912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 26564218 - 26564305
Alignment:
Q  327 ggattgtgagctaagcacttttaagtgcttatgttgttctagactcaaaaagttaaaaggtcaaaattctctttagtttataggtttt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26564218 ggattgtgagctaagcacttttaagtgcttatgttgttctagactcaaaaagttaaaaggtcgaaattctctatagtttataggtttt 26564305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 26558437 - 26558557
Alignment:
Q  34 tgttcgcgtactccatcccaactccaatatctaaaacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctgggg 133  Q
    |||||||||||||||||||| || |||||||||||| || |||||||||||||||||| ||||||||| ||| | ||||| |||||||||||||| ||||    
T  26558437 tgttcgcgtactccatcccatctacaatatctaaaaaagatataccattcaaaatttgatgtttatcttgagaaggaaattgaatcaaacacttccgggg 26558536  T
Q  134 atcttcaaaaggtgaggtttc 154  Q
    |||| ||||||||||||||||    
T  26558537 atctgcaaaaggtgaggtttc 26558557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 50935891 - 50935770
Alignment:
Q  34 tgttcgcgtactccatcccaactccaatatctaaaacagttataccattcaaaatttggtgtttatctcgagcatgaaatcgaatcaaacacttctgggg 133  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||||||||| ||||    
T  50935891 tgttcgcgcactccatcccaactacaatatctaaaacagttataccattcaaagtttggtgtttatctcgagcatgaagtgaaatcaaacacttccgggg 50935792  T
Q  134 atcttcaaaaggtgaggtttct 155  Q
    ||||||||||||| ||||||||    
T  50935791 atcttcaaaaggtaaggtttct 50935770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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