View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_4 (Length: 671)
Name: NF0829_low_4
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 69 - 642
Target Start/End: Complemental strand, 38836566 - 38835998
Alignment:
| Q |
69 |
tattttattttattttatataatttgagtcttctaacacgcatttgatacacaaacaaggatgtctcaattccaaagttgatatgcaagcaagagtaaca |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38836566 |
tattttattttattttatataatttgagtcttctaacacgcatttgatacacaaacaaggatatctcaattccaaagttgatatgcaag----agtaaca |
38836471 |
T |
|
| Q |
169 |
tactgatata--atgtagccattacaaaagtcaaaaatatcataggatcataacttaaaaaggaaatgttgaggattatcataaacaatgccctagataa |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38836470 |
tactgatataccatgtagccattacaaaagtcaaaaatatcataggatcataacttaaaaaggaaattttgaggattatcataaacaatgccctagataa |
38836371 |
T |
|
| Q |
267 |
atggccgaaataaagggagaaatgtttttgccatgactttaggatatataataaaaattcaatccagttgcattattgttttgagagagagtcaatgtca |
366 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38836370 |
atggccgaaataaagggggaaatgtttttgccatgactt-aggatata--ataaaaattcaatccagttgcattattgttttgagagagagtcaatgtca |
38836274 |
T |
|
| Q |
367 |
gtgccttgagtttggattgtcttgatggaagagtagaatatggggacctctttgagaaagactcccattgatatatagaaactcagattccttatataat |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38836273 |
gtgccttgagtttggattgtcttgatggaagagtagaatatggggacctctttgagaaagactcccattgatatatagaaactcagattccttatataat |
38836174 |
T |
|
| Q |
467 |
tgtaatgaccggccagcagctacaattattgctattttgaggacccttttagaaaaaacaatatctatgtccatgttcataactcataaaggaccatcag |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38836173 |
tgtaatgaccggccagcagctacaattattgctattttgaggacccttttagaaaaaacaatatctatgtccatgttcataactcataaaggaccatcag |
38836074 |
T |
|
| Q |
567 |
taaattaagacagatatgtcttttttctagtactaacaaagtatgtcaattgactgagagaaaaatgaatggttcc |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38836073 |
taaattaagacagatatgtcttttttctagtactaacaaagtatgtcaattgaccgagagaaaaatgaatggttcc |
38835998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 38836606 - 38836564
Alignment:
| Q |
44 |
tataggttcgtccatgttcaacctctattttattttattttat |
86 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38836606 |
tataggttcgtccatattcaacctctattttattttattttat |
38836564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 111 times since January 2019
Visitors: 6125