View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_42 (Length: 358)
Name: NF0829_low_42
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 106 - 348
Target Start/End: Original strand, 8803771 - 8804013
Alignment:
| Q |
106 |
ccaagtgaaatttaaacataaggtataacttaaccnnnnnnnncatatatgtaataaagaataaacgttatatatttattcatatacaacatgactatga |
205 |
Q |
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| T |
8803771 |
ccaagtgaaatttaaacataaggtataacttaaccttttttttcatatatgtaataaagaataaacgttatatatttattcatatacaacatgactatga |
8803870 |
T |
|
| Q |
206 |
tcatgtaacnnnnnnntattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaagctatgttcatcaa |
305 |
Q |
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| T |
8803871 |
tcatgtaacaaaaaaatattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaagctatgttcatcaa |
8803970 |
T |
|
| Q |
306 |
gccaagaaatgatgtcaccaagaatttgagtaattgtttcatc |
348 |
Q |
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| T |
8803971 |
gccaagaaatgatgtcaccaagaatttgagtaattgtttcatc |
8804013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 106 - 348
Target Start/End: Complemental strand, 7088578 - 7088335
Alignment:
| Q |
106 |
ccaagtgaaatttaaacataaggtataacttaaccnnnnnnnn-catatatgtaataaagaataaacgttatatatttattcatatacaacatgactatg |
204 |
Q |
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| T |
7088578 |
ccaagtgaaatttaaacataaggtataacttaacctttttttttcatatatgtaataaagaataaacgttatatatttattcatatacaacatgactttg |
7088479 |
T |
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| Q |
205 |
atcatgtaacnnnnnnntattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaagctatgttcatca |
304 |
Q |
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| T |
7088478 |
atcatgtaacaaaaaaatattgtaaaagaacaagattgattgtgtttgtttctttcttaactaggaagtttcaatattatgtttcaagctatgttcatca |
7088379 |
T |
|
| Q |
305 |
agccaagaaatgatgtcaccaagaatttgagtaattgtttcatc |
348 |
Q |
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| T |
7088378 |
agccaagaaatgatgtcaccaagaatttgagtaattgtttcatc |
7088335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 8803672 - 8803742
Alignment:
| Q |
7 |
gggaggacgggttgcaatattattatttttgaagggagagaagagtaattttctctaaaatttaagtgacc |
77 |
Q |
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| T |
8803672 |
gggaggacgggttgcaatattattatttttgaagggagagaggagtaattttctctaaaatttaagtgacc |
8803742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 7088673 - 7088607
Alignment:
| Q |
11 |
ggacgggttgcaatattattatttttgaagggagagaagagtaattttctctaaaatttaagtgacc |
77 |
Q |
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| T |
7088673 |
ggacgggttgcaatattattatttttgaagggagagaggagtaattttctctaaaatttaagtgacc |
7088607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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