View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_47 (Length: 351)
Name: NF0829_low_47
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 6256219 - 6255894
Alignment:
| Q |
1 |
acccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6256219 |
acccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacaca |
6256120 |
T |
|
| Q |
101 |
acaccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctatt---ttttcttat |
197 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
6256119 |
acaccaaaccgcaactgcagtggcatcactgaaaaactgcaactctgcataggactgttgtcaaacacagtagcacataaaatctatttttttttcttat |
6256020 |
T |
|
| Q |
198 |
tcttcaagttcttattctctgtttgttgtctgacatatacatttccttgagaagcatccatgtttgaccatttctcacattgccatcatcttatccaccg |
297 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
6256019 |
tcttcaagttcgtattctctgtttgttgtctgacatataaatttccttgagaagcatccatgtttgaccatttctcacattgtcatcatcttatccactg |
6255920 |
T |
|
| Q |
298 |
gaaattgaacctaaatccacataaat |
323 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6255919 |
gaaattgaacctaaatccacataaat |
6255894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 51207614 - 51207934
Alignment:
| Q |
1 |
acccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51207614 |
acccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacaca |
51207713 |
T |
|
| Q |
101 |
acaccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
51207714 |
acaccaaaccgcaactgcagtggcatcacagaaaaactgcaactttgcacaggactgctgttaaacacaacaacacataaaatctattttttcttattct |
51207813 |
T |
|
| Q |
201 |
tcaagttcttattctctgtttgttgtctgacatatacatttccttgagaagcatccatgtttgaccatttctcacattgccatcatcttatccaccggaa |
300 |
Q |
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||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||||| | | ||||||||||||| | || |
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| T |
51207814 |
tcaagttcttattctctgtttgt--tctagcatataaatttccttgagaagcatccatgcttgagcatttctcacatggtcgtcatcttatccactgaaa |
51207911 |
T |
|
| Q |
301 |
attgaacctaaatccacataaat |
323 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
51207912 |
attgaacctaaatctacataaat |
51207934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 31 - 323
Target Start/End: Original strand, 43430057 - 43430349
Alignment:
| Q |
31 |
agaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaactgcagtggcatcaca |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
43430057 |
agaaaccaaaatagcaataaaagccagccagaagcaactccgaaacacgctagcaagcctcccaaacacaacaccaaatcacaactgcagtggcatcacg |
43430156 |
T |
|
| Q |
131 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctga |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43430157 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagcagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctag |
43430256 |
T |
|
| Q |
231 |
catatacatttccttgagaagcatccatgtttgaccatttctcacattgccatcatcttatccaccggaaattgaacctaaatccacataaat |
323 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||| | ||||||||||||||||||| ||||| |
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| T |
43430257 |
catataaatttccttgagaagcatccatgcttgaccatttcacacattgccatcaccttattcactgaaaattgaacctaaatccacgtaaat |
43430349 |
T |
|
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