View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_49 (Length: 340)
Name: NF0829_low_49
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_49 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 151 - 340
Target Start/End: Complemental strand, 48043734 - 48043552
Alignment:
| Q |
151 |
gggattccactgctggttctaggt-aataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
249 |
Q |
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| T |
48043734 |
gggattccactgctggttctaggttaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
48043635 |
T |
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| Q |
250 |
atttcaaaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaa |
340 |
Q |
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| T |
48043634 |
atttcaaaaaatttgctttttttcaggatgtgc--------tccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaa |
48043552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 337
Target Start/End: Complemental strand, 48051701 - 48051521
Alignment:
| Q |
156 |
tccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttgatttca |
255 |
Q |
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| T |
48051701 |
tccactgctggttctaagtaacaagattgataaacctggggatttgtctaagcaagacctgacagaaaaggtttaagtagtgtgtgatcctatgatttc- |
48051603 |
T |
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| Q |
256 |
aaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaat |
337 |
Q |
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| T |
48051602 |
aaattttagcttttaatcaggatgtgtccgtacttgcctttcatatgatgttgtttcacatgtgcaggggactgaaatcaat |
48051521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48043939 - 48043874
Alignment:
| Q |
1 |
caggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
66 |
Q |
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| T |
48043939 |
caggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
48043874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 48056968 - 48056891
Alignment:
| Q |
163 |
ctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgt |
240 |
Q |
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| T |
48056968 |
ctggttcttggtaataagattgacaaacctggtgctttgtctaagcaagacacgacagaaaagatgtaagtactgtgt |
48056891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 48045552 - 48045485
Alignment:
| Q |
152 |
ggattccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgaca |
219 |
Q |
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| T |
48045552 |
ggattcaattgctggttttaggtaataaaattgacaaacctgacaatttgtctaagcaagacccgaca |
48045485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
| Q |
68 |
aaagaatggagtgataagggtgatctcagattcaattcc |
106 |
Q |
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| T |
48043832 |
aaagaatggagtgataagggtgatctcagattcgattcc |
48043794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 48056836 - 48056773
Alignment:
| Q |
273 |
caggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaat |
337 |
Q |
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| T |
48056836 |
caggatgtgcttgtactttcctttcat-tgatgttgtttcacgtgcactggagactgaaatcaat |
48056773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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