View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_51 (Length: 333)
Name: NF0829_low_51
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2035868 - 2036194
Alignment:
| Q |
1 |
tgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgtagtctccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2035868 |
tgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgcagtctccactt |
2035967 |
T |
|
| Q |
101 |
tcattcatggt--tactcatgaagctatgttgtattgtagtatatatcaatacagttattctcattgtaacgaactgaatcaaataagttagagggattt |
198 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2035968 |
tcattcatggtgttactcatgaagctatgttgtattgtagtatatatcaatacagttattctcattgtaacgaactgaatcaaataagttagagggattt |
2036067 |
T |
|
| Q |
199 |
gatcaattaccatcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttagcttaggtttctactatattgaacatcgattattt |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2036068 |
gatcaattaccatcacgtaatcataaccaacttttgatcaataaagaatattcatattctctttagcttaggtttctactatattgaacatcgattattt |
2036167 |
T |
|
| Q |
299 |
aactcgatactggtgttccttcttttc |
325 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
2036168 |
aactcgatactggtgttccttcttttc |
2036194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 1990315 - 1990499
Alignment:
| Q |
150 |
acagttattctcattgtaacgaactgaatcaaataagttagagggatttgatcaattaccatcacgtaatcataaccaacttttgatcaataaagaatat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1990315 |
acagttattctcattgtaacgaactgaatcaaataagttagagggatttgatcaattatcatcacgtaatcataaccaacttttgatcaataaagaatat |
1990414 |
T |
|
| Q |
250 |
tcatattctctt---------tagcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttc |
325 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1990415 |
tcatattctctttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttcttttc |
1990499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 1990120 - 1990270
Alignment:
| Q |
3 |
cttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgtagtctccactttc |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1990120 |
cttgaacttcggaagcttgctcaaaggtttgaagataagatctatactgatgcggcaagccaggtacattcattacgagtattgtgcagtctccactttc |
1990219 |
T |
|
| Q |
103 |
attcatggttactcatgaagctatgttgtattgtagtatatatcaatacag |
153 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
1990220 |
attcatggttattcgtgaaactatgttgtattgtagtatatatcaatacag |
1990270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 2021683 - 2021832
Alignment:
| Q |
4 |
ttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgtagtctccactttca |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
2021683 |
ttgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttca |
2021782 |
T |
|
| Q |
104 |
ttcatggttactcatgaagctatgttgtattgtagtatatatcaatacag |
153 |
Q |
| |
|
|| || |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2021783 |
ttgattgttactcatgaaattatgttgtattgtagtatatatcaatacag |
2021832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 2021877 - 2022073
Alignment:
| Q |
150 |
acagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatc |
237 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
2021877 |
acagttgttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacgtaatcataaccaacttttgatc |
2021976 |
T |
|
| Q |
238 |
aataaagaatattcatattctcttt---------agcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttc |
325 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021977 |
aataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttc |
2022073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 2019050 - 2019189
Alignment:
| Q |
3 |
cttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgtagtctccactttc |
102 |
Q |
| |
|
|||||||||| | |||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| || ||||||| | |
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|
| T |
2019050 |
cttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactctt |
2019149 |
T |
|
| Q |
103 |
attcatggttactcatgaagctatgttgtattgtagtata |
142 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
2019150 |
attcatggttacgcatgctactatgttgtattgcagtata |
2019189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 48204736 - 48204673
Alignment:
| Q |
262 |
tagcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttcttttc |
325 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48204736 |
tagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttc |
48204673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 40911206 - 40911269
Alignment:
| Q |
5 |
tgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggta |
68 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40911206 |
tgaacttcggaagattgcccaaaagtttgaagataagatttatactgctgcaacaagccaggta |
40911269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 44968781 - 44968718
Alignment:
| Q |
5 |
tgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggta |
68 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
44968781 |
tgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctgcaacaagccaggta |
44968718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 44983096 - 44983033
Alignment:
| Q |
5 |
tgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggta |
68 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
44983096 |
tgaactttggaagattgcccaaaggtttgaagagaagatttatactgctgcaacaagccaggta |
44983033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 2428291 - 2428348
Alignment:
| Q |
262 |
tagcttaggtttctactatattgaacatcgattatttaactcgatactggtgttcctt |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2428291 |
tagcttaggtttctactgtattgaacatcaattatttaactcgatactggtgttcctt |
2428348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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