View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_low_6 (Length: 583)

Name: NF0829_low_6
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_low_6
NF0829_low_6
[»] chr2 (6 HSPs)
chr2 (29-574)||(7127522-7128072)
chr2 (63-193)||(7133173-7133303)
chr2 (275-355)||(7124060-7124141)
chr2 (188-273)||(7124614-7124697)
chr2 (200-273)||(7133078-7133151)
chr2 (413-445)||(33390660-33390692)
[»] chr4 (1 HSPs)
chr4 (423-483)||(41364965-41365026)
[»] chr7 (1 HSPs)
chr7 (422-479)||(739259-739316)
[»] chr6 (1 HSPs)
chr6 (427-483)||(431028-431085)
[»] chr5 (1 HSPs)
chr5 (503-566)||(42273387-42273449)
[»] chr8 (2 HSPs)
chr8 (423-480)||(29749271-29749329)
chr8 (447-480)||(32616835-32616868)
[»] chr1 (1 HSPs)
chr1 (427-482)||(7210679-7210735)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 29 - 574
Target Start/End: Complemental strand, 7128072 - 7127522
Alignment:
Q  29 agttaggcggggagggaaggaagggctttgaaggggaaaatagagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7128072 agttaggcggggagggaaggaagggctttgaaggggaaaatagagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaa 7127973  T
Q  129 gtggttgttggatagtgaaactttatgtattgcagaattggttgacaatattccgattgagtggct----------------attagatattgattgttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||    
T  7127972 gtggttgttggatagtgaaactttatgtattgcagaattggttgacaatattccgattgagtggctgtatacgaaagtggctattagatattgattgttg 7127873  T
Q  213 ttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccattttagagcatcggcaccatggttttggattcgcgaactag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127872 ttggctagaggatcgtttgaattgcctcccggaagaagttaagctccgtatcaagtccattttagagcatcggcaccatggttttggattcgcgaactag 7127773  T
Q  313 caaaggattctaagcaggctgtgacttttctgatttgttgcagaatcgaaataaacacacagatgttgctgcgatggactctgcccagcactattgtagg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7127772 caaaggattctaagcaggctgtgacttttctgatttgttgcagaatcgaaataaacacacagatgttgctgcaatggactctgcccagcactattgtagg 7127673  T
Q  413 acaataacgatttgttcaaattctgctatgcaacatgctatagcgctgctataggcgctatttaacaatatgaggggaggtgcaggattatttttctttt 512  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127672 acaataacgatttgttcaaattctgctatgcaacatgct-----------ataggcgctatttaacaatatgaggggaggtgcaggattatttttctttt 7127584  T
Q  513 ctaaattaagcaagctacgaagtgttttcaaaaaatgatttaagtttgattgaaatattatt 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127583 ctaaattaagcaagctacgaagtgttttcaaaaaatgatttaagtttgattgaaatattatt 7127522  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 7133303 - 7133173
Alignment:
Q  63 ggaaaatagagaggaatcttacatcttattggtctattggtgatggtttaactgctaactcttgaagtggttgttgga-tagtgaaactttatgtattgc 161  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||| |||| ||| ||| ||||| |||||||| ||||||||||||    
T  7133303 ggaaaatagagagaaatctttcatcttatttgtctattggtgatggtttaaatgctaacgcttggagtagtttttggagtagtgaaa-tttatgtattgc 7133205  T
Q  162 agaattggttgacaatattccgattgagtggc 193  Q
    |||| ||||||||||||||| |||||||||||    
T  7133204 agaagtggttgacaatattctgattgagtggc 7133173  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 7124141 - 7124060
Alignment:
Q  275 tagagcatcggcaccatggttttggattcgcgaactagcaaaggattctaagcaggctgtgac-ttttctgatttgttgcag 355  Q
    |||| ||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  7124141 tagaccatcggcgccttggttttgggttcgcaaactagcaaaggattctaagcaggctgtgactttttctgatttgctgcag 7124060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 7124697 - 7124614
Alignment:
Q  188 agtggctattagatattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccatt 273  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||||| || ||||| ||||| ||||||  ||||| |||||||    
T  7124697 agtggctat-agatattgatggttgttggctaaaggatcgtttgaattggct-ccggaggaagtgaagctccatatcaggtccatt 7124614  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 7133151 - 7133078
Alignment:
Q  200 atattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccatt 273  Q
    ||||| || |||||| ||||||||||| ||||||||| || | ||| |||||||||||| | |||| |||||||    
T  7133151 atattcatggttgttagctagaggatcatttgaattggcttctggaggaagttaagctcggcatcaggtccatt 7133078  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 33390660 - 33390692
Alignment:
Q  413 acaataacgatttgttcaaattctgctatgcaa 445  Q
    |||||| ||||||||||||||||||||||||||    
T  33390660 acaatagcgatttgttcaaattctgctatgcaa 33390692  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 41365026 - 41364965
Alignment:
Q  423 tttgttcaaattctgctatgcaaca-tgctatagcgctgctataggcgctatttaacaatat 483  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||| |||||||| |||||||    
T  41365026 tttgttcaaattctgctacgcaacagtgctatagcgctgttatagacgctatttcacaatat 41364965  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 479
Target Start/End: Original strand, 739259 - 739316
Alignment:
Q  422 atttgttcaaattctgctatgcaacatgctatagcgctgctataggcgctatttaaca 479  Q
    ||||||| ||||||  |||||||| | |||||||||||| ||||||||||||||||||    
T  739259 atttgtttaaattcaactatgcaataggctatagcgctgttataggcgctatttaaca 739316  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 431085 - 431028
Alignment:
Q  427 ttcaaattctgctatgcaaca-tgctatagcgctgctataggcgctatttaacaatat 483  Q
    |||||||||||||| |||||| |||||||||||  |||||| ||||||||||||||||    
T  431085 ttcaaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaatat 431028  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 566
Target Start/End: Original strand, 42273387 - 42273449
Alignment:
Q  503 tttttcttttctaaattaagcaagctacgaagtgttttcaaaaaatgatttaagtttgattgaa 566  Q
    |||||||||||||||||||||||||||| || || |||| |||||||| | |||| ||||||||    
T  42273387 tttttcttttctaaattaagcaagctacaaaatg-tttctaaaaatgaatgaagtgtgattgaa 42273449  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 480
Target Start/End: Complemental strand, 29749329 - 29749271
Alignment:
Q  423 tttgttcaaattctgctatgcaaca-tgctatagcgctgctataggcgctatttaacaa 480  Q
    |||||||||||| |||||||| ||| ||||||||||||||||||   ||||||||||||    
T  29749329 tttgttcaaattttgctatgctacagtgctatagcgctgctataactgctatttaacaa 29749271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Original strand, 32616835 - 32616868
Alignment:
Q  447 atgctatagcgctgctataggcgctatttaacaa 480  Q
    |||||||||||||||||||| |||||||||||||    
T  32616835 atgctatagcgctgctatagccgctatttaacaa 32616868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 7210679 - 7210735
Alignment:
Q  427 ttcaaattctgctatgcaacat-gctatagcgctgctataggcgctatttaacaata 482  Q
    ||||||||| |||||||||||  |||||| |||||||| || |||||||||||||||    
T  7210679 ttcaaattccgctatgcaacagcgctataccgctgctacagccgctatttaacaata 7210735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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