View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_63 (Length: 315)
Name: NF0829_low_63
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 29942440 - 29942357
Alignment:
| Q |
152 |
ggacatgtaagtttttaattgtggtccacaaataaaattgcagccacaataacagttttagaagtctctgcaaggccatcgcaa |
235 |
Q |
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| T |
29942440 |
ggacatgtaagtttttaattgtggtccacaactaaaattgcagccacaataacagttttagaagtctctgcaaggccatcgcaa |
29942357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 29942541 - 29942467
Alignment:
| Q |
53 |
atgaaccaagcaaaagttgttagcacctgcaaatgaacatatatcatgtaacaactagaaaaacggcctctccat |
127 |
Q |
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| T |
29942541 |
atgaaccaagcaaaagttgttagcacctgcaaatgaacatatatcatgtaacaactagaaaaacagcctctccat |
29942467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 29942361 - 29942311
Alignment:
| Q |
265 |
cgcaataaaaaggcttccattgcaaacgctgttgcggctacaacaatttaa |
315 |
Q |
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| T |
29942361 |
cgcaataaaaaggcttccgttgcaaacgctgttgcggctacaacaatttaa |
29942311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 10164090 - 10164122
Alignment:
| Q |
245 |
cacatttgcctgtattttaccgcaataaaaagg |
277 |
Q |
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| T |
10164090 |
cacatttgcctgtattttaccgcaatataaagg |
10164122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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