View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_64 (Length: 314)
Name: NF0829_low_64
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 27982430 - 27982320
Alignment:
| Q |
29 |
agaagaaatatgtaaagaattatttaaactgtttatgtaaatttccatacctagctaggcctgaggcgttacatttgtgttagaataacgaaagaaatcc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27982430 |
agaagaaatatgtaaagaattatttaaactgtttatgtaaatttccatacctagctaagcctgaggtgttacatttgtgttagaataacgaaagaaatcc |
27982331 |
T |
|
| Q |
129 |
aacgaatattt |
139 |
Q |
| |
|
|||||| |||| |
|
|
| T |
27982330 |
aacgaaaattt |
27982320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 190 - 288
Target Start/End: Complemental strand, 27965418 - 27965319
Alignment:
| Q |
190 |
catcatatattggactaggagttcaaa-ttgaagtggaccatattactattaatgaaagattgtaggcatgtcaaaccattcctcattcattgaattgtc |
288 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27965418 |
catcatatattggactaggagttcaaaattgaagtggaccatattactgttaatgaaagattgtagacatgtcaaaccattcctcattcattgaattgtc |
27965319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2444 times since January 2019
Visitors: 6162