View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_67 (Length: 309)
Name: NF0829_low_67
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 7624137 - 7624416
Alignment:
| Q |
1 |
cctattataggccatggttttggtccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaac |
100 |
Q |
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| T |
7624137 |
cctattataggccatggttttggtccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaac |
7624236 |
T |
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| Q |
101 |
tagctaatgcaatgaaccatagagacatggttaatttatgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaag |
200 |
Q |
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| T |
7624237 |
tagctattgcaatgaaccatagagacatggttaatttatgttatgtatgtggctatggttatgaaatatgaaatatatgtgatgatgattaaggattaag |
7624336 |
T |
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| Q |
201 |
gatataaataagttttgtacgtataacaacagcaatctatttgaatagggaaaaacaaattaactacttgacgttgtatt |
280 |
Q |
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| T |
7624337 |
gatataaataagttttgtacgtataacaacagcaatctatttgaatagggaaaaacaaattaactacttgacgttgtatt |
7624416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 7659548 - 7659415
Alignment:
| Q |
1 |
cctattataggccatggttttggtccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaac |
100 |
Q |
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| T |
7659548 |
cctattataggccatggttttggtccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaac |
7659449 |
T |
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| Q |
101 |
tagctaatgcaatgaaccatagagacatggttaa |
134 |
Q |
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| T |
7659448 |
tagctaatgcaatgaaccatagagacatggttaa |
7659415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7675175 - 7675047
Alignment:
| Q |
1 |
cctattataggccatggttttggtccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaac |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||| ||||||||||| | ||| ||||| || ||| |
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| T |
7675175 |
cctattattggccatggttttggtccaggtgggagtggtagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaac |
7675076 |
T |
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| Q |
101 |
tagctaatgcaatgaaccatagagacatg |
129 |
Q |
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||| |||||||||| ||||||||||||| |
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| T |
7675075 |
tagagaatgcaatgagccatagagacatg |
7675047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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