View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_low_68 (Length: 304)

Name: NF0829_low_68
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_low_68
NF0829_low_68
[»] chr7 (1 HSPs)
chr7 (46-304)||(46633143-46633402)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 46 - 304
Target Start/End: Complemental strand, 46633402 - 46633143
Alignment:
Q  46 aatttcccttgtgatacttaccaatcttctaagatttttgatattttacatgccgatatttgtggtccttattctaccccttctaagtcttgtcataagt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633402 aatttcccttgtgatacttaccaatcttctaagatttttgatattttacatgccgatatttgtggtccttattctaccccttctaagtcttgtcataagt 46633303  T
Q  146 actgtattactctt-gttgatgattttagttgatttacttggataattttgatgaaacaaaaaagtaaaattagaggtcacttggttaattttcgttctt 244  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633302 attgtattactctttgttgatgattttagttgatttacttggataattttgatgaaacaaaaaagtaaaattagaggtcacttggttaattttcgttctt 46633203  T
Q  245 atattgaaacacaattttctagttgattcacttggataatggtgtgaacttttatgcacg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633202 atattgaaacacaattttctagttgattcacttggataatggtgtgaacttttatgcacg 46633143  T

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