View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_69 (Length: 298)
Name: NF0829_low_69
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 68 - 285
Target Start/End: Complemental strand, 40113395 - 40113178
Alignment:
| Q |
68 |
ttcaaactttagtaggaaacgtagggcatacaattatagtcacaagtggaatagattccaaatggaaacagatttaaagcatgcacactatggatgggaa |
167 |
Q |
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| T |
40113395 |
ttcaaaatttagtaggaaacgtagggcatataattatagtcacaagtggaatagattccaaatggaaacagatttaaagcatgcacactatggatgggaa |
40113296 |
T |
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| Q |
168 |
acaaatgtgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttgaagtagttggatccgatt |
267 |
Q |
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| T |
40113295 |
acaaaagtgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttgaagtagttggatccgatt |
40113196 |
T |
|
| Q |
268 |
cctgtggacaggcaacag |
285 |
Q |
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|||||||||||||||||| |
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| T |
40113195 |
cctgtggacaggcaacag |
40113178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 12583645 - 12583576
Alignment:
| Q |
6 |
aataatccataactgtttcccttgttatattgatctatgaacttcttgctacatttgtgctattcaaact |
75 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12583645 |
aataatccataactgtttcccttgttatattcatctatgaacttcttgctacatttgtgctattcaaact |
12583576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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