View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_low_79 (Length: 271)

Name: NF0829_low_79
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_low_79
NF0829_low_79
[»] chr5 (1 HSPs)
chr5 (16-243)||(43112203-43112430)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 43112430 - 43112203
Alignment:
Q  16 ataaaagaagagaaaattgtaattaacaacacaaaactctattaaccatgaaccatgcataacgatatatttatttaaaggatccattaacataagtccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43112430 ataaaagaagagaaaattgtaattaacaacacaaaactctattaaccatgaaccatgcataacgatatatttatttaaaggatccattaacataagtccc 43112331  T
Q  116 gtaaccccgttttatgtgtcgtaagtggaggcctgggacgataaaatttgtacatatgtttatcttgtgctatagcaaattgctcttaaaaggggctact 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43112330 gtaaccccgttttatgtgtcgtaagtggaggcctgggacgataacatttgtacatatgtttatcttgtgctatagcaaattgctcttaaaaggggctact 43112231  T
Q  216 tatgtctgaatttgaggaggtttaatat 243  Q
    ||| ||||||||||||||||||||||||    
T  43112230 tatctctgaatttgaggaggtttaatat 43112203  T

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