View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_80 (Length: 269)
Name: NF0829_low_80
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_80 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 178238 - 178047
Alignment:
| Q |
29 |
tcatagggagataagcacatctaattaaatcaatgaaatgaagtgatgatttctcccacttctttgacccaaacatactttctgaagatgattcatgttg |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178238 |
tcatggggagataagcacatctaattaaatcaatgaaatgaagtgat---ttctcccacttctttgacccaaacatactttctgaagatgattcatgttg |
178142 |
T |
|
| Q |
129 |
atgaggataacaagatacaaaatatacatgtgcaagatttagaaaccatttgtactttttgtcactgcttggaacaactgtgtcatatagttttt |
223 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178141 |
atgaggataacaagatacaaaatattcatgtgcaagatttagaaaccatttgtgctttttgtcactgcttggaacaactgtgtcatatagttttt |
178047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 115547 - 115740
Alignment:
| Q |
24 |
tagtatcatagggagataagcacatctaattaaatcaatgaaatgaagtgatgatttctcccacttctttgacccaaacatactttctgaagatgattca |
123 |
Q |
| |
|
|||| ||||||||||||| | | ||||||| |||||| |||||||| ||||| |||||||| ||||||| | ||||| | |||||||||||| || |
|
|
| T |
115547 |
tagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgat---ttctcccatttctttgcctcaaactttctttctgaagat---tcc |
115640 |
T |
|
| Q |
124 |
tgttgatgaggataacaagatacaaaatatacatgtgcaagatttagaaaccatttgtactttttgtcactgcttggaacaactgtgtcatatagttttt |
223 |
Q |
| |
|
| ||||| || ||||||||| ||||||| |||||||||| || |||||||| |||| ||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
115641 |
ttgtgatgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagttttt |
115740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 606833 - 606737
Alignment:
| Q |
127 |
tgatgaggataacaagatacaaaatatacatgtgcaagatttagaaaccatttgtactttttgtcactgcttggaacaactgtgtcatatagttttt |
223 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||| || || | ||||| |||| |||||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
606833 |
tgatgagggtaacaagatgcaaaatactcatgtgctagcttgataaaccgattgtggtttttgacactgcttggaacaaccgtgtcatataattttt |
606737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1362 times since January 2019
Visitors: 6140