View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_86 (Length: 256)
Name: NF0829_low_86
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 11176579 - 11176830
Alignment:
| Q |
1 |
aaaaaacttcaagacagtagtataaaaccaatttttaattcaagaaaatcataatatcattctttcatagattctttgatatgaggattcgtaaaaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11176579 |
aaaaaacttcaagacagtagtataaaaccaatttttaattcaagaaaatcataatatcattctttcatagattctttgatatgaggattcgtaaaaatgg |
11176678 |
T |
|
| Q |
101 |
ttcatttccaattgaaacttttcaagcgcacgtttgtcaccttaaccaatctccatgggatgttatccaccaggttcttattctcttctcagatctatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11176679 |
ttcatttccaattgaaacttttcaagcgcacgtttgtcaccttaaccaatctccatgggatgttatccaccaggttcttattctcttctcagatctatta |
11176778 |
T |
|
| Q |
201 |
-ggnnnnnnnnncatatcattcattagggttcttcatattcttcatctcact |
251 |
Q |
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| T |
11176779 |
gggtttttttttcatatcattcattagggttcttcatattcttcatatcact |
11176830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 11156892 - 11156966
Alignment:
| Q |
94 |
aaaatggttcatttccaattgaaacttttcaagcgcacgtttgtcaccttaaccaatctccatgggatgttatcc |
168 |
Q |
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||||||||||||||||| |||||| ||||||| | || |||||||| ||||||||||||||||||||||| |||| |
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| T |
11156892 |
aaaatggttcatttccagttgaaatttttcaaacccatgtttgtcaacttaaccaatctccatgggatgtgatcc |
11156966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 11163850 - 11163924
Alignment:
| Q |
94 |
aaaatggttcatttccaattgaaacttttcaagcgcacgtttgtcaccttaaccaatctccatgggatgttatcc |
168 |
Q |
| |
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|
| T |
11163850 |
aaaatggttcattttcacctcaaaatcttcaaacacacatttgtcagcttaaccaatctccatgggatgtgatcc |
11163924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 4703967 - 4703899
Alignment:
| Q |
94 |
aaaatggttcatttccaattgaaacttttcaagcgcacgtttgtcaccttaaccaatctccatgggatg |
162 |
Q |
| |
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|||||| |||||| || ||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4703967 |
aaaatgattcattaccggttgaaccttttcaaatgcacgtttgtcagcttaaccaatctccatgggatg |
4703899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 4704061 - 4704021
Alignment:
| Q |
51 |
ataatatcattctttcatagattctttgatatgaggattcg |
91 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
4704061 |
ataatattattcattcatagattctttgatatgaggattcg |
4704021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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