View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_88 (Length: 255)
Name: NF0829_low_88
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_88 |
 | |
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| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0445 (2 HSPs) |
| | |
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| [»] scaffold2089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7588716 - 7588940
Alignment:
| Q |
1 |
aaaaaataacactaaactgagatctgccaaggaaagagagtataaaaaattagagaaagatttagaggaaatataaaatatggcaacatgaaatttgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7588716 |
aaaaaataacactaaactgagatctgccaaggaaagagagtataaaaaattagagaaagatttagaggaaatataaaatatggcaacatgaaatttgagt |
7588815 |
T |
|
| Q |
101 |
aacaacggaaataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtg-aagaacttgaaag |
199 |
Q |
| |
|
|||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
7588816 |
aacaacggaaattaagagtaaaaaacgtgtgtactaatatttaaagagagaaattacttgaaa--gtgagtggaacaatgaaagtgaaagaacttgaaag |
7588913 |
T |
|
| Q |
200 |
atctctcaaggaaagacttagaggaag |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7588914 |
atctctcaaggaaagacttagaggaag |
7588940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 6510813 - 6510699
Alignment:
| Q |
88 |
atgaaatttgagtaacaacggaaataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtga |
187 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
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|
| T |
6510813 |
atgaaatttgagtaaaaacggaaataaagagtaaaaaatgtgtttagtaagatttaaagagagaaattacttgaaa--gtgagtggaacaaacaaagtga |
6510716 |
T |
|
| Q |
188 |
agaacttgaaagatctc |
204 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
6510715 |
aaaacttgaaagatctc |
6510699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 6418361 - 6418242
Alignment:
| Q |
51 |
tagagaaagatttagaggaaatataaaatatg-gcaacatgaaatttgagtaacaacggaaataaagagtaaaaaatgtgtttactaagatttaaagaga |
149 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| | || |||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||| |
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|
| T |
6418361 |
tagagaactatttagaggcaatataaaatatgtgaaatatgaaatttgagtaacaatggaaattaagagtaaaaa-tgtgtttactaagatctaaagaga |
6418263 |
T |
|
| Q |
150 |
gaaattacttgaaagtgtgtg |
170 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
6418262 |
gaaattactttaaagtgtgtg |
6418242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 6822523 - 6822348
Alignment:
| Q |
54 |
agaaagatttagagg-aaatataaaatatggcaac-atgaaatttgagtaacaacggaaataaagagtaaaaaatgtgtttacta---agatttaaagag |
148 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||| |||| ||||||| || ||||||||| ||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
6822523 |
agaaagattcagagggaaatataaaatatgtcaaatatgagatttgagcaaaaacggaaatttagagtaaaatatgtgtttactactaagattcaaagag |
6822424 |
T |
|
| Q |
149 |
agaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctctcaaggaaagacttagaggaag |
226 |
Q |
| |
|
|||||||||||||||||| || ||| ||| |||||||||||||||||||||| | ||| ||||||||||||||||| |
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|
| T |
6822423 |
agaaattacttgaaagtgaatg--gaagaaacaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaag |
6822348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 6552268 - 6552077
Alignment:
| Q |
14 |
aaactgagatctgccaaggaaagagagtataa--aaaattagagaaagatttagaggaaatataaaatat-ggcaacatgaaatttgagtaacaacggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| || | || ||||||||||||||||||||||| |
|
|
| T |
6552268 |
aaactgagatctgccaaggaaagagagtataaataatattagagaaagatttagaggcaatataaaaaatatgaaatatgaaatttgagtaacaacggaa |
6552169 |
T |
|
| Q |
111 |
ataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctctcaagg |
210 |
Q |
| |
|
|| ||||||||||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||||||| ||| | |
|
|
| T |
6552168 |
at----------------------taagatttaaagagataagttacttgaaa--gtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaag |
6552093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 8473529 - 8473612
Alignment:
| Q |
143 |
aaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctctcaaggaaagacttagaggaag |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||| ||||||||||||||||||||| |
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|
| T |
8473529 |
aaagagagaaattacttgaaagtgtgtgtggaacaaacaaaccgaagaactttagagatctcccaaggaaagacttagaggaag |
8473612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 6950420 - 6950492
Alignment:
| Q |
154 |
ttacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctctcaaggaaagacttagaggaag |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
6950420 |
ttacctgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctcccaaagaaggacttagaggaag |
6950492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 6471845 - 6471743
Alignment:
| Q |
116 |
gagtaaaaaatgtgtttactaaga--tttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctctcaaggaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||| ||| |||||||||| | ||||||| || |||| |
|
|
| T |
6471845 |
gagtaaaaaatgtgtttactaagagatttaaagagagaaattacatgaaagt--gtgtagaacaaacaaactgaagaactttagagatctcctaacgaaa |
6471748 |
T |
|
| Q |
214 |
gactt |
218 |
Q |
| |
|
||||| |
|
|
| T |
6471747 |
gactt |
6471743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 6950340 - 6950406
Alignment:
| Q |
17 |
ctgagatctgccaaggaaagagagtataaaaa-attagagaaagatttagaggaaatataaaatatg |
82 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
6950340 |
ctgagatctgccaaggaaagagggtataaaaagattagagaaagatttagaagcaatataaaatatg |
6950406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 6749899 - 6749987
Alignment:
| Q |
116 |
gagtaaaaaatgtgtttactaaga--tttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctc |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||| ||| |||||||||| | ||||||| |
|
|
| T |
6749899 |
gagtaaaaaatgtgtttactaagagatttaaagagagaaattacatgaaa--gtgtgtagaacaaacaaactgaagaactttagagatctc |
6749987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 6584864 - 6584669
Alignment:
| Q |
14 |
aaactgagatctgccaaggaaagagagtataaaaaattagagaaagatttagaggaaatataaaatatggc-aacatgaaatttgagtaacaacggaaat |
112 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||| | || | |||||||||||| ||| | |||| |
|
|
| T |
6584864 |
aaacttagatctgccaaggaaatagagcataaaaacgtagaga--gatttagaggaaatataaaatatgccaaatacgaaatttgagtaccaaagtaaat |
6584767 |
T |
|
| Q |
113 |
aaa-----------gagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagat |
201 |
Q |
| |
|
|| |||||||||| ||||||| | ||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| |||| || |
|
|
| T |
6584766 |
taagaggaagcagtgagtaaaaaacgtgtttagt---atttagagagagaaattacttgaaa--gtgtgtggaacaaacaaaccgaagaactcgaaaaat |
6584672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 6823154 - 6823085
Alignment:
| Q |
14 |
aaactgagatctgccaaggaaagagagtataaaaaat---tagagaaagatttagaggaaatataaaata |
80 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6823154 |
aaactgagatctgctaagtaatgagagtataaaaaaaaaatagagaaagatttagaggcaatataaaata |
6823085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8592625 - 8592691
Alignment:
| Q |
14 |
aaactgagatctgccaaggaaagagagtataaaa----aattagagaaagatttagaggaaatataaaa |
78 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
8592625 |
aaactgatatctgccaag--aagagagtataaaaaaaaaattagagaaagatttagaggcaatataaaa |
8592691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 5238 - 5047
Alignment:
| Q |
14 |
aaactgagatctgccaaggaaagagagtataaaaaat--tagagaaagatttagaggaaatataaaatatg-gcaacatgaaatttgagtaacaacggaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| || | || ||||||||||||||||||||||| |
|
|
| T |
5238 |
aaactgagatctgccaaggaaagagagtataaataatattagagaaagatttagaggcaatataaaaaatatgaaatatgaaatttgagtaacaacggaa |
5139 |
T |
|
| Q |
111 |
ataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtgtgtgtggaacaaagaaagtgaagaacttgaaagatctc |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
5138 |
attaagagtaaaaaatgtgtttactaagatttaaagagataagttacttgaaagtg--tgtggaacaaacaaactgaagaacttgaaagatctc |
5047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 8774 - 8931
Alignment:
| Q |
66 |
aggaaatataaaatatg-gcaacatgaaatttgagtaacaacggaaataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaag |
164 |
Q |
| |
|
||||||||||||| ||| | || ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8774 |
aggaaatataaaaaatgtgaaatatgaaatttgagtaacaacggaaattaagagtaaaatatgtgtttactgagatttaaagagagaaattacttgaaag |
8873 |
T |
|
| Q |
165 |
tgtgtg-------tggaacaaagaaagtgaagaacttgaaagatctctcaaggaaaga |
215 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
8874 |
tgagtgactggaatggaagaaagaaagtgaagaacttaaaagatctcccaaagaaaga |
8931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 7804 - 7867
Alignment:
| Q |
20 |
agatctgccaaggaaagagagtataaaaaat--tagagaaagatttagaggaaatataaaatat |
81 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
7804 |
agatctgccaagtaaagagagtataaaaaaaaatagacaaagatttagaggaaatataaaatat |
7867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2089 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold2089
Description:
Target: scaffold2089; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 909 - 832
Alignment:
| Q |
88 |
atgaaatttgagtaacaacggaaataaagagtaaaaaatgtgtttactaagatttaaagagagaaattacttgaaagtg |
166 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| |
|
|
| T |
909 |
atgaaatttgagtaacaacgtaaattaagagtaaaaaatgtgtttattaagacttaaa-agaaaaattacttgaaagtg |
832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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