View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_9 (Length: 529)
Name: NF0829_low_9
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 29 - 512
Target Start/End: Original strand, 47933309 - 47933790
Alignment:
| Q |
29 |
aaattacagggtttgaatcatgtatttttctgatggtcattacttccgcgtatattctgtaggatcagtttgaaaaattgaccttttttccgaaaattcc |
128 |
Q |
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| T |
47933309 |
aaattacagggtttgaatcatgtatttttctgatggtcattacttc-gcgtatattctgtaggatcagtttgaaaaattgaccttttttccgaaaattcc |
47933407 |
T |
|
| Q |
129 |
aagggaatgaaaccaagtggccattgcctccatgagatgatcttcttcttcgttgaacaagtctaagatagaatcgtcttggcaatcaagttgactatca |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47933408 |
aagggaatgaaaccaagtggccattgcctccatgagatgatctgcttcttcgttgaacaagtctaagatagaatcgtctaggcaatcaagttgactatca |
47933507 |
T |
|
| Q |
229 |
aattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagtttggaagtgcctcaagttcttgcataccatattgtttcaaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
47933508 |
aattcaccttattttaatgatgtgaggtcaggacatgagaagctataatatattatagttcggaagtgcctcaagttcttgcatacca-attgtttcaaa |
47933606 |
T |
|
| Q |
329 |
ttctttcacattcctaccctttgttccttacactgtatcatcaatagtgaaagccttgtatagagttttcagcactgttggcgaccttaactctttttca |
428 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933607 |
ttctttcacattcctaccctttgttcattacactgtatcatcaatagtgaaagccttacatagagttttcagcactgttggcgaccttaactctttttca |
47933706 |
T |
|
| Q |
429 |
ccctaagactacactctagcactgatttagtgtgtttgtaaaatattttgaacggaaaagctcctctgttacctttgtttatgg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47933707 |
ccctaagactacactctagcactgatttagtgtgtttgtaaaatattttgaacggaaaagctcctctgttacctttgtttatgg |
47933790 |
T |
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