View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0829_low_95 (Length: 251)
Name: NF0829_low_95
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_95 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5725363 - 5725121
Alignment:
| Q |
1 |
cgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725363 |
cgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaat |
5725264 |
T |
|
| Q |
101 |
ctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725263 |
ctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgaca |
5725164 |
T |
|
| Q |
201 |
ttgttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
5725163 |
ttgttgtagaaaaaccttgcaatagcttgacatgcttcttctc |
5725121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 4370340 - 4370580
Alignment:
| Q |
3 |
accattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatct |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
4370340 |
accattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatct |
4370439 |
T |
|
| Q |
103 |
catcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacatt |
202 |
Q |
| |
|
|||| |||||||||||||||| ||| | || ||| ||||||||| |||| ||||||| ||||||||||||||| | |||| ||| | ||||| |||| |
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| T |
4370440 |
catcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcatt |
4370539 |
T |
|
| Q |
203 |
gttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
243 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||| |
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|
| T |
4370540 |
gttgtagaaaaaccttgcaatcgcttgacatgcttcctctc |
4370580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 4365946 - 4366186
Alignment:
| Q |
3 |
accattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatct |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| |||||| |
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|
| T |
4365946 |
accattatggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatct |
4366045 |
T |
|
| Q |
103 |
catcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacatt |
202 |
Q |
| |
|
|||| |||||||||| ||||| ||||| || ||| ||||||||| |||| ||||||| ||||||||||||||||| |||| || | ||||| |||| |
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| T |
4366046 |
catcataagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcatt |
4366145 |
T |
|
| Q |
203 |
gttgtagaaaaaccttgcaatagctcgacatgcttcatctc |
243 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
4366146 |
gttgtagaaaaaccttgcaatcacttgacatgcttcctctc |
4366186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 4414352 - 4414147
Alignment:
| Q |
35 |
agctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt-aatctcatcgaaagacggtggcttaaaccctacacc |
133 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||| |||||| |||| ||||||||||||||| || ||||| ||||| |||||| ||| |||| || |
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| T |
4414352 |
agctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaaccc |
4414253 |
T |
|
| Q |
134 |
atgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacat |
233 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | |
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|
| T |
4414252 |
atgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctcgagaa |
4414153 |
T |
|
| Q |
234 |
gcttca |
239 |
Q |
| |
|
|||||| |
|
|
| T |
4414152 |
gcttca |
4414147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 4390245 - 4390417
Alignment:
| Q |
66 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
165 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| ||| || |
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|
| T |
4390245 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
4390344 |
T |
|
| Q |
166 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
238 |
Q |
| |
|
| || | |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
4390345 |
actccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4390417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4360542 - 4360716
Alignment:
| Q |
1 |
cgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaat |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| |||| | || |||| || ||| |||| |||||||||| | ||| |
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|
| T |
4360542 |
cgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatccaat |
4360641 |
T |
|
| Q |
101 |
ctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcact |
175 |
Q |
| |
|
||| ||| |||||||||||| ||||| |||||| ||||||||| ||||||||| || ||||||||||||| |
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|
| T |
4360642 |
atcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact |
4360716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 4377562 - 4377734
Alignment:
| Q |
66 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
165 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| | | ||||||||||||||||| || || |
|
|
| T |
4377562 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaa |
4377661 |
T |
|
| Q |
166 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
238 |
Q |
| |
|
| || |||||| ||||| | | |||| | |||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4377662 |
actccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4377734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 4385132 - 4385304
Alignment:
| Q |
66 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
165 |
Q |
| |
|
|||| |||||| ||| ||||||| |||||| |||||||||| ||||| || ||| ||||||||||||| | | ||||||||| ||||||| || || |
|
|
| T |
4385132 |
aacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaa |
4385231 |
T |
|
| Q |
166 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc |
238 |
Q |
| |
|
| || |||||| ||||| | | | |||| ||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4385232 |
actccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc |
4385304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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