View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_low_99 (Length: 247)
Name: NF0829_low_99
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 8095034 - 8094813
Alignment:
| Q |
16 |
tccctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtaccagagttacctaaactagaatt |
115 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
8095034 |
tccctaaagtccccgagttacctaaactagagcagcctaaggttcctgaattgacaaaacccgagattcctaaagtaccagagttacctaagctagaatt |
8094935 |
T |
|
| Q |
116 |
gccttaggttcctaaatttccaaaacctgatctacctaaaatccaagaaactccaaaagtcgttccaaccaccacgccttaagttggaacttggaaccat |
215 |
Q |
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|||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8094934 |
gcctaaggttcctgaatttccaaaacctgagctacctaaaatcctagaaactccaaaagtcgttccaaccaccacgccttaagttggaacttggaaccat |
8094835 |
T |
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| Q |
216 |
gccttttatttccttgtctgtg |
237 |
Q |
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||||||||||||||||| |||| |
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| T |
8094834 |
gccttttatttccttgtttgtg |
8094813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8111237 - 8111110
Alignment:
| Q |
1 |
tgccaaatcccaaactccctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtaccagagtt |
100 |
Q |
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| T |
8111237 |
tgccaaaacccaacctccctaaagtccccgagttacctaaactagagcagcctaaggttcctgaattgacaaaacccgagattcctaaagtaccagagtt |
8111138 |
T |
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| Q |
101 |
acctaaactagaattgccttaggttcct |
128 |
Q |
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|||||| |||||||||||| |||||||| |
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| T |
8111137 |
acctaagctagaattgcctaaggttcct |
8111110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 8095572 - 8095496
Alignment:
| Q |
18 |
cctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtacc |
94 |
Q |
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| T |
8095572 |
cctaaaattcccgaatcacctaaactagagcaacctaaggttcctgaattgccaaaacctgaaattcctaaagtacc |
8095496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 8111760 - 8111684
Alignment:
| Q |
18 |
cctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtacc |
94 |
Q |
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| T |
8111760 |
cctaaaattcccgaatcacctaaactagagcaacctaaggttcctgaattgccaaaacctgaaattcctaaagtacc |
8111684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 8111109 - 8111042
Alignment:
| Q |
162 |
gaaactccaaaagtcgttccaaccaccacgccttaagttggaacttggaaccatgccttttatttcct |
229 |
Q |
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| T |
8111109 |
gaaactccaaaagtcgtttctaccaccacgccttaagttggaacttggaaccatgcctttcatttcct |
8111042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 8095448 - 8095358
Alignment:
| Q |
4 |
caaatcccaaactccctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtacc |
94 |
Q |
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|||| ||| |||| |||||| |||| |||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8095448 |
caaaacccgaactacctaaaatccctgaatcaccgaagttagagcaacctaaggttcctgaattgacaaaacctgaaattcctaaagtacc |
8095358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 8111636 - 8111546
Alignment:
| Q |
4 |
caaatcccaaactccctaaagtccccgaattacctaaactagagcaacctaaggttcctgaattgacaaaacctgagattcctaaagtacc |
94 |
Q |
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|||| ||| |||| |||||| |||| |||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8111636 |
caaaacccgaactacctaaaatccctgaatcaccgaagttagagcaacctaaggttcctgaattgacaaaacctgaaattcctaaagtacc |
8111546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 8095120 - 8095074
Alignment:
| Q |
62 |
tgaattgacaaaacctgagattcctaaagtaccagagttacctaaac |
108 |
Q |
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||||||||||||||||||| |||||||||| || || |||||||||| |
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| T |
8095120 |
tgaattgacaaaacctgagtttcctaaagttcctgaattacctaaac |
8095074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 8111311 - 8111262
Alignment:
| Q |
59 |
tcctgaattgacaaaacctgagattcctaaagtaccagagttacctaaac |
108 |
Q |
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|||||||||||||||||| ||| |||||||||| || || |||||||||| |
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| T |
8111311 |
tcctgaattgacaaaacccgagtttcctaaagttcctgaattacctaaac |
8111262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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