View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_high_100 (Length: 252)

Name: NF0830_high_100
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_high_100
NF0830_high_100
[»] chr2 (5 HSPs)
chr2 (1-244)||(43455534-43455777)
chr2 (114-169)||(44221720-44221775)
chr2 (114-166)||(44232538-44232590)
chr2 (114-166)||(44209506-44209558)
chr2 (1-45)||(44560317-44560361)
[»] chr8 (1 HSPs)
chr8 (90-202)||(4502978-4503090)
[»] chr4 (3 HSPs)
chr4 (96-169)||(2879047-2879120)
chr4 (114-169)||(2895803-2895858)
chr4 (111-169)||(2888515-2888573)
[»] chr1 (1 HSPs)
chr1 (111-169)||(2159249-2159307)
[»] chr7 (2 HSPs)
chr7 (117-169)||(39536645-39536697)
chr7 (117-169)||(39545962-39546014)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43455534 - 43455777
Alignment:
Q  1 tgttctatccagtaattactcttttgtgaatcaaacggacccttaaaatatatttttaaacctctaannnnnnnnnnacgttaactcgtcctctgacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  43455534 tgttctatccagtaattactcttttgtgaatcaaacggacccttaaaatatatttttaaacctctaattttttttttacgttaactcgtcctctgacctg 43455633  T
Q  101 agcaagggcgtaaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaacggatacaaccggttgaactgtttgacaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43455634 agcaagggcgtaaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaacggatacaaccggttgaactgtttgacaattg 43455733  T
Q  201 tttacaccaacaaaaaatatagaaccatataatgctcctatgat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43455734 tttacaccaacaaaaaatatagaaccatataatgctcctatgat 43455777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 44221720 - 44221775
Alignment:
Q  114 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| ||||||||||||||||||||  |||||||||| |||||||| ||||||||    
T  44221720 ggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttcaac 44221775  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 44232538 - 44232590
Alignment:
Q  114 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttc 166  Q
    ||||| ||||| ||||||||||||||| |||||| ||| ||||||||||||||    
T  44232538 ggtaaggcagagtacattccagcagctttttctctataaaatacagttctttc 44232590  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 44209506 - 44209558
Alignment:
Q  114 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttc 166  Q
    ||||| ||||| ||||||||||||||| |||||| ||  ||||||||||||||    
T  44209506 ggtaaggcagagtacattccagcagctttttctctattaaatacagttctttc 44209558  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44560317 - 44560361
Alignment:
Q  1 tgttctatccagtaattactcttttgtgaatcaaacggaccctta 45  Q
    |||||| ||||||| ||||| |||||||||||||||| |||||||    
T  44560317 tgttctgtccagtacttactattttgtgaatcaaacgcaccctta 44560361  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 4503090 - 4502978
Alignment:
Q  90 cctctgacctgagcaagggcgtaaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaacggatacaaccggttgaactg 189  Q
    ||||| ||||| || | ||| ||||| |||| || ||||||||||||||||||||||| |||||| || |||||||||| || |||||| ||||||||||    
T  4503090 cctcttacctgtgctaaggcataaggcaaaggagcatacattccagcagctctttctctatagaacactgttctttcaatggctacaactggttgaactg 4502991  T
Q  190 tttgacaattgtt 202  Q
    |||||||||||||    
T  4502990 tttgacaattgtt 4502978  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 2879120 - 2879047
Alignment:
Q  96 acctgagcaagggcgtaaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| ||||| || || ||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  2879120 acctgtgcaagtgcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaac 2879047  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 2895803 - 2895858
Alignment:
Q  114 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  2895803 ggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaac 2895858  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 2888573 - 2888515
Alignment:
Q  111 taaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||| |||||||||    
T  2888573 taaggtaaggcagaatacatcccagcagctctttctctatagaacacagatctttcaac 2888515  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 2159249 - 2159307
Alignment:
Q  111 taaggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| ||||| |||||||||||||||||||||||||  ||||| || ||||| |||||    
T  2159249 taaggcaaagcggaatacattccagcagctctttctctgtagaagactgttctctcaac 2159307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 39536645 - 39536697
Alignment:
Q  117 aaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| |||||||||||||| |||||||||| ||| || || |||||||||||    
T  39536645 aaagctgaatacattccagccgctctttctctataaaagactgttctttcaac 39536697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 39545962 - 39546014
Alignment:
Q  117 aaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 169  Q
    ||||| ||||||||||| || |||||||||||||| || || |||||||||||    
T  39545962 aaagctgaatacattccggctgctctttctcgataaaagaccgttctttcaac 39546014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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