View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_high_105 (Length: 250)

Name: NF0830_high_105
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_high_105
NF0830_high_105
[»] chr3 (3 HSPs)
chr3 (2-242)||(2821635-2821875)
chr3 (102-187)||(48196786-48196871)
chr3 (129-219)||(46574483-46574573)
[»] chr1 (2 HSPs)
chr1 (102-187)||(23539739-23539823)
chr1 (57-186)||(40569674-40569804)
[»] chr5 (1 HSPs)
chr5 (102-187)||(16397967-16398052)
[»] chr8 (1 HSPs)
chr8 (142-220)||(10723775-10723853)
[»] scaffold0018 (1 HSPs)
scaffold0018 (60-157)||(32103-32200)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 2821635 - 2821875
Alignment:
Q  2 attagtttataaccttataagattatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctg 101  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821635 attagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatccctg 2821734  T
Q  102 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  2821735 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattcttatctttaa 2821834  T
Q  202 aattccacaacttcaacaaaggtcttgtatagtttcatctc 242  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  2821835 aatcccacaacttcaacaaaggtcttgtatagtttcatctc 2821875  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  102 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 187  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  129 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 219  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  102 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 187  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  57 tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 156  Q
    |||| |||||||||||||||||| | |||| |  || |||| || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  157 ataacatt-caaggttcttattattttctct 186  Q
    |||||||| | ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  102 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 187  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  142 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 220  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 32103 - 32200
Alignment:
Q  60 tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa 157  Q
    |||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || ||  ||| ||||||| |||| ||||||||| ||||||    
T  32103 tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

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