View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_107 (Length: 247)
Name: NF0830_high_107
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_107 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7664548 - 7664782
Alignment:
| Q |
1 |
gattttgcagcaaatcttattttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcctttcttgttcatgtttttcatcaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7664548 |
gattttgcagcaaatcttattttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcatttcttgttcatgtttttcatcaag |
7664647 |
T |
|
| Q |
101 |
tttggtgcatttgnnnnnnnatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttga |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7664648 |
tttggtgcatttgtttttttatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttga |
7664747 |
T |
|
| Q |
201 |
ttgattgtacgttttcatcaacaatcttcgtatctctgc |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
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|
| T |
7664748 |
ttgatt----gttttcatcaacaatcttcgtatctctgc |
7664782 |
T |
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