View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_11 (Length: 678)
Name: NF0830_high_11
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Complemental strand, 38287493 - 38286971
Alignment:
| Q |
12 |
atgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga |
111 |
Q |
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| T |
38287493 |
atgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga |
38287394 |
T |
|
| Q |
112 |
tatcatacgcacagacnnnnnnnnn--ggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaattatagacatcatga |
209 |
Q |
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| T |
38287393 |
tatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaatcatagacatcatga |
38287294 |
T |
|
| Q |
210 |
ttataaacttgctggattgtcatcaatgaa-gcaataaaaataactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaaga |
308 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287293 |
ttataaacttgctggattgtcatcaatgaaagcagtaa---taactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaaga |
38287197 |
T |
|
| Q |
309 |
aaatttgtctttgtacacaaatacaccttattgactctttaagagagaaagaaatnnnnnnnnttatgtgaatatgtgatcgatataattaatatgttga |
408 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
38287196 |
aaatttgtctttgtacacaaatataccttattgactctttaagagagaaagaaataaaaaaaattatgtgaatatgtgatcgata----taatatgttga |
38287101 |
T |
|
| Q |
409 |
tgataagatacaaagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattgaagt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287100 |
tgataagatacaaagaaaatagagagaaaatgatatacatactatggaatgagtgttgagaaattagagatgaggtaatttaaagtaagcaaattgaagt |
38287001 |
T |
|
| Q |
509 |
atatgcaaagttatatagttggtagttaat |
538 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38287000 |
atatgcaaagttatatagttggtagttaat |
38286971 |
T |
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