View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_15 (Length: 657)
Name: NF0830_high_15
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 96 - 378
Target Start/End: Original strand, 31856653 - 31856936
Alignment:
| Q |
96 |
gggtctgcaagaatgatgtgtcactcttaggattgtgatgggttttgattaaagatatagtacatgatttatattttgcaatatttaggtggagagtata |
195 |
Q |
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| T |
31856653 |
gggtctgcaagaatgatgtgtcactcttaggattgtgatgggttttgattaaagatatagtacgtgatttatattttgcaacatttaggaggagagtata |
31856752 |
T |
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| Q |
196 |
ggtagatttgaatatgcatat-aggagttcaactaccttgactactcaacaattctattgatatagtcttgttttgttacttgcccaagtttgatagttt |
294 |
Q |
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| T |
31856753 |
ggtagatttgaatatgcatattaggagttcaactaccttgactactcaacaattctattgatatagtcttgttttgttacttgcccaagtttgatagttt |
31856852 |
T |
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| Q |
295 |
ggtaggttaggctagaatgaagctgtaattacaaaccaaattttgaaatgactccatttagtcattgacgaattgaagcatata |
378 |
Q |
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| T |
31856853 |
ggtaggttaggctagaatgaagctgtgattataaaccaaattttgaaatgactacatttagtcattgacgaattgaagcatata |
31856936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 417 - 657
Target Start/End: Original strand, 31857343 - 31857583
Alignment:
| Q |
417 |
atgaaggagaaattgatgacatgaagttagagaaggatacaagatgtggcggtattgttgcggggtcaaagtgcaaccgtttattatcacattttaattt |
516 |
Q |
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| T |
31857343 |
atgaaggagaaattgatgaattgaagttagtgaaggatacaagatgtggcggtattgttgtggggtcaaagtgcaaccgtttattatcacattttaattt |
31857442 |
T |
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| Q |
517 |
aattaaattgttgacaataaacactttctttcaacgaaaaa-gtttttatttatatatgtatgtacaacaagagggtcatataattccaaagagtaggta |
615 |
Q |
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| T |
31857443 |
aattaaattgttgacaataagcacttcctttcaaggaaaaaggtttttatttatata--tatgtacaacaagagggtcatataattccaaagagtaggta |
31857540 |
T |
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| Q |
616 |
acctgca-tttacttgtcattttcttacaatttgaagagtatt |
657 |
Q |
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| T |
31857541 |
acctgcattttacttatcattttcttagaatttcaagagtatt |
31857583 |
T |
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