View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_19 (Length: 640)
Name: NF0830_high_19
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_19 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 32313377 - 32313896
Alignment:
| Q |
1 |
ttgatgatacctttgaagtcaactagtttgagctacgattattcaactctaatccataaatgcatcaaatcaatccagttaactcggtgataaactagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313377 |
ttgatgatacctttgaagtcaactagtttgagctacgattattcaactctaatccataaatgcatcaaatcaatccagttaactcggtgataaactagtt |
32313476 |
T |
|
| Q |
101 |
tctttggttcagtcattggagcataaggcataagatactacaattcnnnnnnntcattaaaagacattctcttttaaaattttaacggttagactacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313477 |
tctttggttcagtcattggagcataaggcataagatactacaattcaaaaaaatcattaaaagacattctcttttaaaattttaacggttagactacagt |
32313576 |
T |
|
| Q |
201 |
tgccttgtagaaatatcgaatctacatacatatannnnnnnggtagacaaaatgacaacaatcattaaaaacttacacataaggaattggggttcgaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313577 |
tgccttgtagaaatatcgaatctacatacatatatttttttggtagataaaatgacagcaatcattaaaaacttacacataaggaattggggttcgaacc |
32313676 |
T |
|
| Q |
301 |
acaatcatgacgtccaacttaagaatttcaacatttttccgattgagttataggattgttggaccttttaacatattttatccatcaaatatctataaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32313677 |
acaatcatgacgtccaacttaagaatttcaacattttttcgattgagttataggattgttggaccttttaacatattttatccatcaaatatctatagac |
32313776 |
T |
|
| Q |
401 |
taaaatccgaggtttagatcacaagagatatatatgttttaatagatctttattgtcaaaccacatcttaaagaactggaaagatattcattttttatga |
500 |
Q |
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| T |
32313777 |
taaaatccgaggtttagatcacaagagatatatgtgttttaatagatctttattgtcaaaccacatcttaaagaactggaaagatattctttttttatga |
32313876 |
T |
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| Q |
501 |
actagaaatatctgctgatt |
520 |
Q |
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| T |
32313877 |
actagaaatatctgctgatt |
32313896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 32566357 - 32566481
Alignment:
| Q |
85 |
cggtgataaactagtttctttggttcagtcattggagcataaggcataagatac---tacaattcnnnnnnntcattaaaagacattctcttttaaaatt |
181 |
Q |
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||||||||| |||||||||||||||| |||| ||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
32566357 |
cggtgataagctagtttctttggttcggtcaatggagcatacggcataagatactcttacaattcaaaaaaataattaaaagacattctcttttaaaatc |
32566456 |
T |
|
| Q |
182 |
ttaacggttagactacagttgcctt |
206 |
Q |
| |
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| |||| |||||||| |||||||| |
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| T |
32566457 |
tcaacgattagactaaggttgcctt |
32566481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39364857 - 39364813
Alignment:
| Q |
1 |
ttgatgatacctttgaagtcaactagtttgagctacgattattca |
45 |
Q |
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| T |
39364857 |
ttgatgatacctttgaagtcaactagtttgaggaaggattattca |
39364813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 435
Target Start/End: Original strand, 32566656 - 32566718
Alignment:
| Q |
373 |
atattttatccatcaaatatctataaactaaaatccgaggtttagatcacaagagatatatat |
435 |
Q |
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||||||||||||||||||||||| | ||||| ||| | ||||||||||| || | |||||||| |
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| T |
32566656 |
atattttatccatcaaatatctacagactaagatctggggtttagatcataatatatatatat |
32566718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 19369 - 19418
Alignment:
| Q |
289 |
ggggttcgaaccacaatcatgacgtccaacttaagaatttcaacattttt |
338 |
Q |
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|||||||||||| |||||||||||||| | ||| ||||||||||||||| |
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| T |
19369 |
ggggttcgaaccccaatcatgacgtccggcctaacaatttcaacattttt |
19418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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