View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_20 (Length: 621)
Name: NF0830_high_20
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 23225525 - 23224913
Alignment:
| Q |
1 |
cacacagctattatatatgatgttaatagatgtttttctatattatcaacgaaagaccgaaaccctaatccacatatatatttaaaagatttaatgattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23225525 |
cacacagctattatatatgatgttaatagatgtttttctatattatcaacgaaagaccgaaaccctaatccacatatatatttaaaagatttaatgattt |
23225426 |
T |
|
| Q |
101 |
gtcagctgttttacatcataccgttgatagtatatgtatttttatttgcaccnnnnnnnnngtatatgtatttttatcaatcttaaatgacaaagttgaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
23225425 |
gtcagctgttttacatcataccgttgatagtatatgtatttttatttgcaccaaaaaaaaagtatttgtatttttatcaatcttaaatgacaaagttgaa |
23225326 |
T |
|
| Q |
201 |
aagnnnnnnnnnngtttataaatattattccaagattggacaaaatgttggacggtgcacctcacatggtctattttatttgtacccctaggtggtttca |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23225325 |
aagaaaaaaaaaagtttataaatattattccaagattggacaaaatgttggacggtgcacctcacatggtctattttacttgtacccctaggtggtttca |
23225226 |
T |
|
| Q |
301 |
ttagtgtagttagttagtgcttaccactactttcctctctagagatggtttcattagtgtaacgtatacactataaaatgctcaaggaggtaatccaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23225225 |
ttagtgtagttagttagtgcttaccactactttcctctctagagatggtttcattagtgtaacgtatacactataaaatgctcaaggaggtaatccaaat |
23225126 |
T |
|
| Q |
401 |
cccacaatcatttctcaactattctcatgagttttcatttccaatataaagacaataaccaagatgatttctcagccaatcttattagctttgattctat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23225125 |
cccacaatcatttctcaactattctcatgagttttcatttccaatataaagacaataaccaagatgatttctcagccaatcttattagctttgattctat |
23225026 |
T |
|
| Q |
501 |
tcctcctcttccttctccaactctttttgtttaagagaaacaacagagcaaaggagcacttaccttaccctccaagtccactagcaataccaataattgg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23225025 |
tcctcctcttccttctccaactctttttgtttaagagaaacaacagagcaaaggagcacttaccttaccctccaagtccactagcaataccaataattgg |
23224926 |
T |
|
| Q |
601 |
tcatcttcatctc |
613 |
Q |
| |
|
||||||||||||| |
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| T |
23224925 |
tcatcttcatctc |
23224913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 23232291 - 23232246
Alignment:
| Q |
568 |
ccctccaagtccactagcaataccaataattggtcatcttcatctc |
613 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||||| |
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|
| T |
23232291 |
ccctccaagtccaccaacaataccaataattggacatcttcatctc |
23232246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 48592035 - 48592086
Alignment:
| Q |
562 |
accttaccctccaagtccactagcaataccaataattggtcatcttcatctc |
613 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
48592035 |
acctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
48592086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 48601730 - 48601781
Alignment:
| Q |
562 |
accttaccctccaagtccactagcaataccaataattggtcatcttcatctc |
613 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
48601730 |
acctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
48601781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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