View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_22 (Length: 597)
Name: NF0830_high_22
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Original strand, 668998 - 669567
Alignment:
| Q |
9 |
agcagagacagtgtgaattgttggccgnnnnnnntcatgtctcgcgaaaaggaagaaaatgctacacttctctgcttcaatttcaaagtgttgtataatt |
108 |
Q |
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| T |
668998 |
agcagagacagtgtgaattgttggccgaaaaaaatcatgtctcgcgaagaggaagaaaatgctacacttctctgcttcaatttcaaagtgttgtataatt |
669097 |
T |
|
| Q |
109 |
gacaaattttgacccataaccccaattttcgtgctgggtctcaacgttctcactctctaattcttcaactaggaccatacccataacctcaatttcttaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
669098 |
gacaaattttgacccataaccccaattttcgtgctgggtctcaacgttctcactctctaattcttcaactgggaccatacccataacctcaatttcttaa |
669197 |
T |
|
| Q |
209 |
agttttgtatttaatttctgggttaaaatttatggaagatgattatgattaggatgaaggaaagagtaaaaaaggtaactggaatcacaattattcaatt |
308 |
Q |
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| T |
669198 |
agttttgcgtttaatttctgggttaaaatttatggaagatgattatgattaggatgaaggaaagagtaaaaaaggtaactggaatcacaattattcaatt |
669297 |
T |
|
| Q |
309 |
gttgaattttatttggggttaaaattggtgttgttgggaatggaatcaaagaagtaaattagagatttattaaaattgaaatcatagcaattattcaatt |
408 |
Q |
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| T |
669298 |
gttgaattttatttggggttaaaattggtgttgttgggaatggaatcaaagaagtaaattagagatttattaaaattgaaatcatagcaattattcaatt |
669397 |
T |
|
| Q |
409 |
aaatttatggaattttttgataaagttgaattatgaagaagttgttgttgtgattgattgaaaattgagttt-nnnnnnnnnnttctggaaaagattgaa |
507 |
Q |
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| T |
669398 |
aaatttatagaattttttgataaagttgaattatgaagaagttgttgttgtggttgattgaaaattgagtttcaaaaaaaaaaatctggaaaagattgaa |
669497 |
T |
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| Q |
508 |
ccttttgaacatgatgaaagatgatgaagatatgagcaagaagaagaggggaaaaaattaagtgatgatg |
577 |
Q |
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| T |
669498 |
ccttttgaacatgatgaaagatgatgaagatatgagcaagaagaagaggggaaaaaattaagtgatgatg |
669567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 52628051 - 52627927
Alignment:
| Q |
346 |
gaatggaatcaaagaagtaaattagagatttattaaaattgaaatcatagcaattattcaattaaatttatggaattttttgataaagttgaattatgaa |
445 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||| ||||| ||||| |
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| T |
52628051 |
gaatggaatggaagaagcaaattagagatttattaaaattgaaatcatagaaattattcaatttaatttatggaatttttttagaaagatgaatgatgaa |
52627952 |
T |
|
| Q |
446 |
gaagttgttgttgtgattgattgaa |
470 |
Q |
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| T |
52627951 |
gaagttgcttttgtggttgattgaa |
52627927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 27965530 - 27965624
Alignment:
| Q |
357 |
aagaagtaaattagagatttattaaaattgaaatcatagcaattattcaattaaatttatggaattttttgataaagttgaattatgaagaagtt |
451 |
Q |
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| T |
27965530 |
aagaagcaaattagatatttattaaaattgaaatcatagaaattattcaatttaatttatggaagttttttagaaagatgaatgatgaagaagtt |
27965624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 557
Target Start/End: Original strand, 9170704 - 9170770
Alignment:
| Q |
491 |
ttctggaaaagattgaaccttttgaacatgatgaaagatgatgaagatatgagcaagaagaagaggg |
557 |
Q |
| |
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| T |
9170704 |
ttctggaaaaggttgaaccttttgaacatgatgaaagatgatgaagatatgaggaagaagaagaggg |
9170770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 494 - 557
Target Start/End: Original strand, 45395842 - 45395905
Alignment:
| Q |
494 |
tggaaaagattgaaccttttgaacatgatgaaagatgatgaagatatgagcaagaagaagaggg |
557 |
Q |
| |
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|||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45395842 |
tggataaggttgaacattttgaacatgatgaaagatgatgaagatatgaggaagaagaagaggg |
45395905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 3823325 - 3823273
Alignment:
| Q |
405 |
aattaaatttatggaattttttgataaagttgaattatgaagaagttgttgtt |
457 |
Q |
| |
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|||| |||||||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
3823325 |
aatttaatttatggaatatttggagaaagttgaattatgaagaagttgttgtt |
3823273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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