View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_24 (Length: 539)
Name: NF0830_high_24
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 28 - 538
Target Start/End: Original strand, 7969451 - 7969964
Alignment:
| Q |
28 |
caaatgctggcacctgacaaaa-tgagccgaaattcccatgtaatctacactgtccgaaccataaaggaaaaggacaataacatatactaattgccaaaa |
126 |
Q |
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| T |
7969451 |
caaatgctggcacctgacaaaaatgagccgaaattcccatgtaatctacactgtccgaaccataaaggaaaaggacaataacatatactaattgccaaaa |
7969550 |
T |
|
| Q |
127 |
atatgaaagaccaaaagacacannnnnnncatcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctca |
226 |
Q |
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| T |
7969551 |
atatgaaagaccaaaagacacatttttttcatcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctca |
7969650 |
T |
|
| Q |
227 |
a--ccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctct |
324 |
Q |
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| T |
7969651 |
aaaccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctct |
7969750 |
T |
|
| Q |
325 |
aatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacagag |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969751 |
aatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacagag |
7969850 |
T |
|
| Q |
425 |
acggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaacaaaagctttgtatctaaggaacaaaagtc |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7969851 |
acggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaacaaaagctttgtatctaaggaacaaaagtc |
7969950 |
T |
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| Q |
525 |
ctatgctactccac |
538 |
Q |
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| T |
7969951 |
ctatgacactccac |
7969964 |
T |
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