View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_27 (Length: 492)
Name: NF0830_high_27
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 40 - 482
Target Start/End: Original strand, 10920831 - 10921273
Alignment:
| Q |
40 |
tagaaaattaaaatgaaaaagaaatatagtgtaacaactataacaaagatataaaattataggcatatagtaaaagaaactatttttaaacttatctatt |
139 |
Q |
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| T |
10920831 |
tagaaaattaaaatgaaaaagaaatatagtgtaacaattataacatagatataaaattataggcatataataaaagaaactatttttaaacttatctatt |
10920930 |
T |
|
| Q |
140 |
taaagtattataagccgtagggtatgaaagaacatttgatatgtctgaattgaagaacatgcatgtcgtatctctaaagtaaaaagagaataagacaatc |
239 |
Q |
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| T |
10920931 |
taaagtattataagccgtagggtatgaaagaacatttgatatgtctgaattgaagaacatgcatgtcgtatctctaaagtaaaaagagaataagacaatc |
10921030 |
T |
|
| Q |
240 |
taaataatatttgttgctgctttatttaatttcattaccactatctttgagtacaagaaataactctaatgttctaccactaaatgcattaacgaaaatg |
339 |
Q |
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| T |
10921031 |
taaataatatttgttgcttctttatttaatttcattaccactatctttgagtacaagaaataactctaatgttctaccactaaatgcattaacgaaaatg |
10921130 |
T |
|
| Q |
340 |
ctcatcaaattttccaaaccgcggtggaacacatatacaaatgtttacaacacactccgctttcgaaccaaagacacataaaacttctagacaatcagca |
439 |
Q |
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| T |
10921131 |
ctcatcaaattttccaaaccgcggtggaacacatatacaaatgtttacaacacactccgctttcgaaccaaagacacataaaacttctagacaatcagca |
10921230 |
T |
|
| Q |
440 |
tcatctaaacagttgacttcctctgtaataaaaacgagaataa |
482 |
Q |
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| T |
10921231 |
tcatctaaacagttgacttcctctgtaataaaaacgagaataa |
10921273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 43 - 314
Target Start/End: Original strand, 10915772 - 10916028
Alignment:
| Q |
43 |
aaaattaaaatgaaaaagaaatatagtgtaacaactataacaaagatataaaattataggcatatagtaaaagaaactatttttaaacttatctatttaa |
142 |
Q |
| |
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||||||||||||||||| |||||| || |||||| ||||||| |||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
10915772 |
aaaattaaaatgaaaaataaatatcgtataacaattataacatagatatcaaataatagatatatagtaaaagaaactatttttaaa------------- |
10915858 |
T |
|
| Q |
143 |
agtattataagccgtagggtatgaaagaacatttgatatgtctgaattgaagaacatgcatgt--cgtatctctaaagtaaaaagagaataagacaatct |
240 |
Q |
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||||||||||| ||||| |||||||||| ||| ||||||||||||||||||| || |||||| |||||||||||| |||| |||||| |||||||| |
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| T |
10915859 |
-gtattataagcggtaggttatgaaagaaaattcgatatgtctgaattgaagagcacgcatgtgtcgtatctctaaaataaagagagaa---gacaatct |
10915954 |
T |
|
| Q |
241 |
aaataatatttgttgctgctttatttaatttcattaccactatctttgagtacaagaaataactctaatgttct |
314 |
Q |
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| T |
10915955 |
aaataatatttgttgctgctttatttaatttcattaccactatcttagaatacaagaaaatactataatgttct |
10916028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 368 - 482
Target Start/End: Original strand, 10916137 - 10916251
Alignment:
| Q |
368 |
acacatatacaaatgtttacaacacactccgctttcgaaccaaagacacataaaacttctagacaatcagcatcatctaaacagttgacttcctctgtaa |
467 |
Q |
| |
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||||||| |||| ||||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10916137 |
acacatacacaactgtttccaacacactccgcattcgaaccattgagacatgaaacttctagacaatcagcatcatctaaacagttgactttctctgtaa |
10916236 |
T |
|
| Q |
468 |
taaaaacgagaataa |
482 |
Q |
| |
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||||||| ||||||| |
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| T |
10916237 |
taaaaacaagaataa |
10916251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 10925921 - 10925985
Alignment:
| Q |
228 |
aataagacaatctaaataatatttgttgctgctttatttaatttcattaccactatctttgagta |
292 |
Q |
| |
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| T |
10925921 |
aataagacaatctaaataatatttattgctgtcttgtttaatttcattaccattatcttagagta |
10925985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 797439 - 797376
Alignment:
| Q |
212 |
tctaaagtaaaaagagaataagacaatctaaataatatttgttgctgctttatttaatttcatt |
275 |
Q |
| |
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|||||| ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
797439 |
tctaaaataaaaagagaagaagataatctaaataatatttgttgctgtcttatttcatttcatt |
797376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 10946078 - 10946214
Alignment:
| Q |
156 |
gtagggtatgaaagaacatttgatatgtctgaattgaagaacatgcatgtcg-tatctctaaagtaaaaagagaataagacaatctaaataatatttgtt |
254 |
Q |
| |
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|||| ||||||||||| |||| |||||| |||||| |||| | |||||| |||||| ||| |||| ||| ||||||||||| |||||||||||| || |
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| T |
10946078 |
gtagagtatgaaagaaaatttaatatgtatgaattaaaga----gaatgtcgatatctcaaaaataaagagataataagacaatttaaataatatttatt |
10946173 |
T |
|
| Q |
255 |
gctgctttatttaatttcattaccactatctttgagtacaa |
295 |
Q |
| |
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| || || ||| |||||||||||| |||||| |||||||| |
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| T |
10946174 |
gatgtcttgtttgatttcattaccattatcttagagtacaa |
10946214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 3259339 - 3259396
Alignment:
| Q |
219 |
taaaaagagaataagacaatctaaataatatttgttgctgctttatttaatttcatta |
276 |
Q |
| |
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|||| |||||| |||||||| |||| |||||||||||||| |||||||| ||||||| |
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| T |
3259339 |
taaagagagaagaagacaatataaacaatatttgttgctgtcttatttaagttcatta |
3259396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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