View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_high_31 (Length: 453)

Name: NF0830_high_31
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_high_31
NF0830_high_31
[»] chr1 (7 HSPs)
chr1 (45-445)||(10302925-10303329)
chr1 (267-383)||(7242795-7242911)
chr1 (267-311)||(36982392-36982436)
chr1 (223-311)||(24801371-24801462)
chr1 (264-336)||(35692519-35692591)
chr1 (254-330)||(13546450-13546526)
chr1 (257-309)||(25086078-25086130)
[»] chr3 (7 HSPs)
chr3 (260-391)||(40294642-40294773)
chr3 (223-311)||(22288225-22288316)
chr3 (268-391)||(1642644-1642767)
chr3 (267-388)||(48210943-48211064)
chr3 (223-391)||(25224689-25224860)
chr3 (260-373)||(30995963-30996076)
chr3 (267-303)||(9651087-9651123)
[»] chr5 (7 HSPs)
chr5 (254-388)||(35774609-35774743)
chr5 (260-391)||(10591957-10592088)
chr5 (267-391)||(31113371-31113495)
chr5 (263-305)||(12682668-12682710)
chr5 (223-284)||(28023530-28023594)
chr5 (266-311)||(3525914-3525959)
chr5 (267-311)||(30785046-30785090)
[»] chr2 (8 HSPs)
chr2 (267-391)||(31579209-31579333)
chr2 (260-303)||(17627589-17627632)
chr2 (267-311)||(12133290-12133334)
chr2 (260-303)||(17672661-17672704)
chr2 (260-303)||(18105430-18105473)
chr2 (257-312)||(29995481-29995536)
chr2 (267-373)||(9438134-9438240)
chr2 (261-311)||(32643043-32643092)
[»] chr6 (10 HSPs)
chr6 (260-390)||(12411178-12411308)
chr6 (261-383)||(21910236-21910357)
chr6 (267-390)||(12836878-12837001)
chr6 (254-384)||(28099267-28099397)
chr6 (267-349)||(29185330-29185412)
chr6 (254-303)||(28933162-28933211)
chr6 (260-348)||(5944872-5944960)
chr6 (254-305)||(31107559-31107610)
chr6 (257-311)||(35074511-35074565)
chr6 (263-311)||(31868637-31868685)
[»] chr7 (8 HSPs)
chr7 (223-355)||(8839297-8839432)
chr7 (260-391)||(31492133-31492264)
chr7 (223-355)||(13254117-13254252)
chr7 (222-391)||(29059794-29059966)
chr7 (266-312)||(31717924-31717970)
chr7 (267-311)||(28537427-28537471)
chr7 (336-390)||(42741790-42741844)
chr7 (260-305)||(24172237-24172282)
[»] chr8 (9 HSPs)
chr8 (267-330)||(8878136-8878199)
chr8 (222-391)||(4125004-4125176)
chr8 (260-357)||(15682959-15683056)
chr8 (260-311)||(30936034-30936085)
chr8 (225-312)||(27121809-27121899)
chr8 (260-391)||(13468725-13468856)
chr8 (278-311)||(8034189-8034222)
chr8 (260-305)||(36994566-36994611)
chr8 (271-311)||(4321564-4321604)
[»] chr4 (13 HSPs)
chr4 (222-391)||(31307046-31307218)
chr4 (260-390)||(38766119-38766249)
chr4 (263-391)||(51626286-51626414)
chr4 (267-336)||(2434596-2434665)
chr4 (223-385)||(14854595-14854760)
chr4 (268-311)||(45994560-45994603)
chr4 (260-391)||(46016179-46016310)
chr4 (260-390)||(9012300-9012430)
chr4 (279-309)||(24348724-24348754)
chr4 (286-355)||(3649062-3649131)
chr4 (290-354)||(3976634-3976698)
chr4 (264-312)||(38844227-38844275)
chr4 (267-355)||(47023439-47023527)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 45 - 445
Target Start/End: Original strand, 10302925 - 10303329
Alignment:
Q  45 taatcaaattctaataagcatatttttcatccacccttgttgaatgaagaataaggttcctttgttattatataagtattcaaagaaattcctaatacag 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302925 taatcaaattctaataagcatatttttcatccacccttgttgaatgaagaataaggttcctttgttattatataagtattcaaagaaattcctaatacag 10303024  T
Q  145 tgctatcattcaagcatatttatcaattatttcattttaaaatatttcttttcagtgatattgaaacacctaagaatactt-agatgagatgacacggat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||  ||    
T  10303025 tgctatcattcaagcatatttatcaattatttcattttaaaatatttcttttcagtgatattgaaatacctaagaatacttaagatgagatggcacaaat 10303124  T
Q  244 ctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccata 340  Q
    ||||||||||   ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |  ||||||||| |||||||||| |||||    
T  10303125 ctattctagcttaactaaagtcttgagttcgaatccagctttagacatgcaacaacgttaaaactcttagaaaaaatttaccgttcatttaggttccata 10303224  T
Q  341 atactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttacgcaccaaaattgtggtattgaaataatctagaagtatataggccaagaa 440  Q
    |||||| | ||||||||||||||||||||  ||||||||| | || ||||||||||||||||||  |||||||||||||||||||||||||||||| |||    
T  10303225 atactcaagggattaatttcctcagttgcatgctgaagatgctcggtttacgcaccaaaattgtaatattgaaataatctagaagtatataggccatgaa 10303324  T
Q  441 ttatc 445  Q
    |||||    
T  10303325 ttatc 10303329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 383
Target Start/End: Complemental strand, 7242911 - 7242795
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    |||||||||||| ||| |||||||| ||||||||||||| |||||  || | |||| | |||||   || |||||||||||| |||||| | ||| ||||    
T  7242911 gttcgaatccagtcttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagt 7242812  T
Q  367 tgcgcgctgaagatacc 383  Q
    ||||||| |||||||||    
T  7242811 tgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 36982392 - 36982436
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  36982392 gttcgaattcagccttagacatgcaacaacgttaaaactcttagg 36982436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 24801371 - 24801462
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||||||||||| | || |||    |||||||||||  |||||||||||||||||| |||||| ||  ||||||||| |||||    
T  24801371 cttagatgagatgacacggatttcttatagattaactaaagtccttggttcgaatccagccttaggcatgcagcactgttaaaactcttagg 24801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 35692519 - 35692591
Alignment:
Q  264 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 336  Q
    |||||||||||||| | || | |||||||| ||||||||||| |||||  || ||| ||||||||||||||||    
T  35692519 tgagttcgaatccaacattgggcatgcaacgacgttaaaactcttagggagagtttgccgctcatttaggtcc 35692591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 13546450 - 13546526
Alignment:
Q  254 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 330  Q
    ||||||||| || |||||||||||| |||| ||||| ||||| ||||||||| ||| |  || |||||||| |||||    
T  13546450 actaaagtcgtgggttcgaatccagtcttatacatgtaacaatgttaaaactcttatggagagtttaccgcccattt 13546526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 25086130 - 25086078
Alignment:
Q  257 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaactttta 309  Q
    ||||| ||||||||||| |||  ||||  ||||||||||||||||||||||||    
T  25086130 aaagttctgagttcgaaaccaatcttaagcatgcaacaacgttaaaactttta 25086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 40294642 - 40294773
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| |||||   |  || ||||||||||   ||||| |||||||||||||||| | |    
T  40294642 gtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtct 40294741  T
Q  360 cctcagttgcgcgctgaagatacccgatttac 391  Q
    || ||||||||| |  | ||||||||||||||    
T  40294742 ccgcagttgcgcacaaaggatacccgatttac 40294773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 22288225 - 22288316
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||||||||||| | |||| ||||| |   || |||||||||||||||||| |||||||  ||||||||||| ||||||||| |||||    
T  22288225 cttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagg 22288316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 1642644 - 1642767
Alignment:
Q  268 ttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagtt 367  Q
    |||||||| ||||||  ||||||| |   |||||||||||||||  || | |||||  ||||| ||||||| |||||| || |||||| ||||| |||||    
T  1642644 ttcgaatctagccttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagtt 1642743  T
Q  368 gcgcgctgaagatacccgatttac 391  Q
    |||||| || |||| |||||||||    
T  1642744 gcgcgcggaggatatccgatttac 1642767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 48211064 - 48210943
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    ||||||||||||||||   |||||| ||||||||||||| ||| |  ||  || |||   |||||||||||| ||||||||| | ||| || ||| ||||    
T  48211064 gttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagt 48210965  T
Q  367 tgcgcgctgaagatacccgatt 388  Q
    ||| ||| ||||||||||||||    
T  48210964 tgcacgcggaagatacccgatt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 391
Target Start/End: Original strand, 25224689 - 25224860
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 319  Q
    |||||||||||||| |||| ||| |||||||   || || |||||| ||||||||| ||  || |  ||||| || |||||||||| ||| |  ||| ||    
T  25224689 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactcttaaggagaactt 25224788  T
Q  320 accgctcatttaggtcccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttac 391  Q
     |||| ||||||||||||| ||| ||| | |||||| | ||| ||||||| ||| || |||||||| |||||    
T  25224789 gccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttac 25224860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 30996076 - 30995963
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| ||||||||||  |||| | ||||||||| |||||||||| |||||  || | | |||| ||| | ||||||| ||| ||||| |||||| | |    
T  30996076 gtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtct 30995977  T
Q  360 cctcagttgcgcgc 373  Q
    || |||||||||||    
T  30995976 ccgcagttgcgcgc 30995963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 9651087 - 9651123
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaa 303  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  9651087 gttcgaattcagccttggacatgcaacaacgttaaaa 9651123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 388
Target Start/End: Original strand, 35774609 - 35774743
Alignment:
Q  254 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggat 353  Q
    ||||||||| |||||||||||  |||||| |||||||||||| ||||||||  |||||  ||  || |||| |||||  ||| || ||||||||| | ||    
T  35774609 actaaagtcttgagttcgaatttagccttggacatgcaacaatgttaaaacacttagggagagcttgccgcacatttgagtctcacaatactcgatgaat 35774708  T
Q  354 taatttcctcagttgcgcgctgaagatacccgatt 388  Q
    |||| ||||||||||| ||| ||||||||||||||    
T  35774709 taatctcctcagttgcacgcggaagatacccgatt 35774743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 10591957 - 10592088
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| |||||||||||||||| | |||||| ||  ||||||||| |||||  || | | |||| |||||  |||||| ||| ||||| |||||| | |    
T  10591957 gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtct 10592056  T
Q  360 cctcagttgcgcgctgaagatacccgatttac 391  Q
    |  ||||||||||| || ||||||||||||||    
T  10592057 ctgcagttgcgcgcggaggatacccgatttac 10592088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 31113371 - 31113495
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    |||||||| ||||||| | |||||| ||  ||||||||| |||||  ||   |||||| ||||| | ||||| ||||||||| |||||| | ||| ||||    
T  31113371 gttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagt 31113470  T
Q  367 tgcgcgctgaagatacccgatttac 391  Q
    |||||||  | ||||||||||||||    
T  31113471 tgcgcgcgaaggatacccgatttac 31113495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 12682668 - 12682710
Alignment:
Q  263 ctgagttcgaatccagccttagacatgcaacaacgttaaaact 305  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  12682668 ctgagttcgaatccagccttgagcatgcaacaacgttaaaact 12682710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 28023594 - 28023530
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttag 284  Q
    |||||||||||||  |||||||| |||||||   || || |||||||||||||||||||||||||    
T  28023594 cttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttag 28023530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 3525959 - 3525914
Alignment:
Q  266 agttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||    
T  3525959 agttcgaatccactcttagacatgcaacattgttaaaacttttagg 3525914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 30785090 - 30785046
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||    
T  30785090 gttcgaatccagctttggacatgcagcaacgttaaaactcttagg 30785046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 391
Target Start/End: Complemental strand, 31579333 - 31579209
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    |||||||||||||||| | |||||||||  |||||||||||||||  || | | |||| |||||| |||||| ||| ||||| | |||| ||||| ||||    
T  31579333 gttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagt 31579234  T
Q  367 tgcgcgctgaagatacccgatttac 391  Q
    ||||||| || |||||||| |||||    
T  31579233 tgcgcgcggaggatacccggtttac 31579209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 17627589 - 17627632
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 303  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  17627589 gtcctgagttcgaatccagccttgggcatgcaacaacgttaaaa 17627632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 12133334 - 12133290
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||    
T  12133334 gttcgaatccagccttggacatgcagcaacgttaaaactcttagg 12133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 17672661 - 17672704
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 303  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  17672661 gtcctgagttcgaatccaaccttgggcatgcaacaacgttaaaa 17672704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 18105473 - 18105430
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 303  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  18105473 gtcctgggttcgaatccagccttgggcatgcaacaacgttaaaa 18105430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 29995536 - 29995481
Alignment:
Q  257 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 312  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||||| ||| ||||    
T  29995536 aaagtcctgagttcgaatccagcattgaaaatgcaacaacgttaaaattttaagga 29995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 9438240 - 9438134
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    |||||||||||||||| | |||||| ||  ||||||||| |||||| |||  | |||| |||||  |||||| ||| || || |||||| ||||| ||||    
T  9438240 gttcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagt 9438141  T
Q  367 tgcgcgc 373  Q
    |||||||    
T  9438140 tgcgcgc 9438134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 32643092 - 32643043
Alignment:
Q  261 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||| ||||||    
T  32643092 tcctgaattcgaatccagcctt-gacatgcaacaacgtcaaaacatttagg 32643043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 12411178 - 12411308
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||| || | | |||| |||||| |||||| ||| || || |||||| | |    
T  12411178 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtct 12411277  T
Q  360 cctcagttgcgcgctgaagatacccgattta 390  Q
    || ||||||||||| |  |||||||| ||||    
T  12411278 ccacagttgcgcgcgggggatacccggttta 12411308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 21910236 - 21910357
Alignment:
Q  261 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttc 360  Q
    ||||| |||||||||||||||| | ||||||||| |||||||||| ||||   || | | |||||||||||||||||| ||||||| | |||||| | ||    
T  21910236 tcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctc 21910334  T
Q  361 ctcagttgcgcgctgaagatacc 383  Q
    | ||||||| ||| || ||||||    
T  21910335 cgcagttgcacgcggaggatacc 21910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 390
Target Start/End: Complemental strand, 12837001 - 12836878
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcctcagt 366  Q
    |||||||||||||||||| |||||| || |||||||||| |||||  ||  |  |||| ||||| ||||||| ||| || || |||||| | ||| ||||    
T  12837001 gttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagt 12836902  T
Q  367 tgcgcgctgaagatacccgattta 390  Q
    ||||||| || |||||||| ||||    
T  12836901 tgcgcgcggaggatacccggttta 12836878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 384
Target Start/End: Original strand, 28099267 - 28099397
Alignment:
Q  254 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggat 353  Q
    ||||| |||||| |||||||||||||||| | |||||| ||  |||||||||||||||  ||||||  ||  |||||  || ||||||| ||||| ||||    
T  28099267 actaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagggat 28099366  T
Q  354 taatttcctcagttgcgcgctgaagataccc 384  Q
    || | ||| |||||||| || || |||||||    
T  28099367 tagtctccgcagttgcgagcggaggataccc 28099397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 29185330 - 29185412
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaa 349  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||  |||| || ||  |||||||||| || ||| ||||||    
T  29185330 gttcgaatccagcattagacatgcatcaacgttaaaactcttagggagaatatatcgtccatttaggtctcacaatcctcgaa 29185412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 28933162 - 28933211
Alignment:
Q  254 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 303  Q
    ||||||||||||| || |||| ||||||||||||||||||| ||||||||    
T  28933162 actaaagtcctgattttgaattcagccttagacatgcaacatcgttaaaa 28933211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 5944872 - 5944960
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcga 348  Q
    ||||||||||||||| ||| ||| |||||| ||||  |||||||||||||||  || ||| |||| ||||||| ||| | |||||||||    
T  5944872 gtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgcccatttagatcctacaatactcga 5944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 31107610 - 31107559
Alignment:
Q  254 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 305  Q
    ||||| || ||||||||||||||||| || ||||||||||| ||||||||||    
T  31107610 actaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaact 31107559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 35074511 - 35074565
Alignment:
Q  257 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||||||||| ||| |||||  ||||||| |||| |||||||||||    
T  35074511 aaagtcctgagttcgaatctagctttagatgtgcaacaccgttcaaacttttagg 35074565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 31868685 - 31868637
Alignment:
Q  263 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||||| |||| ||||| |||||| ||||||||| |||||    
T  31868685 ctgagttcgaatccaaccttggacatacaacaatgttaaaactcttagg 31868637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 8839432 - 8839297
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 319  Q
    |||||||||||||| |||| ||| |||||||   || || |||||| |||||||||||||||| | |||||| || |||||||||| |||||  |||| |    
T  8839432 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatct 8839333  T
Q  320 accgctcatttaggtcccataatactcgaaggatta 355  Q
     ||||  |||||| ||||| ||||||||| ||||||    
T  8839332 gccgcctatttagatcccacaatactcgagggatta 8839297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 31492133 - 31492264
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| |||||||||||||||| | |||||| ||  ||||||||| |||||  ||   | |||| ||||||||||||| ||| ||||| |||||| | |    
T  31492133 gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtct 31492232  T
Q  360 cctcagttgcgcgctgaagatacccgatttac 391  Q
    || ||||||||||| || |||||||| |||||    
T  31492233 ccgcagttgcgcgcggaggatacccggtttac 31492264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 13254252 - 13254117
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 319  Q
    |||||||||||||  |||| ||| |||||||   || || ||||||||||||||||||||||||| |||||| || |||| ||||| |||||  ||   |    
T  13254252 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcct 13254153  T
Q  320 accgctcatttaggtcccataatactcgaaggatta 355  Q
     |||| ||||||||||||| ||| ||||| ||||||    
T  13254152 gccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 391
Target Start/End: Original strand, 29059794 - 29059966
Alignment:
Q  222 acttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatt 318  Q
    ||||||||||||||  |||| ||| |||||||   || || |||||| |||||||||||||||| | |||||| ||  ||||||||| |||||  ||       
T  29059794 acttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcc 29059893  T
Q  319 taccgctcatttaggtcccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttac 391  Q
    | |||| ||||| ||||||| ||| || || |||||| | ||| ||||||||||| || |||||||| |||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttac 29059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 31717970 - 31717924
Alignment:
Q  266 agttcgaatccagccttagacatgcaacaacgttaaaacttttagga 312  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  31717970 agttcgaatccaaccttagacatgcagcaacgttaaaactcttagga 31717924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 28537427 - 28537471
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||||||||||| | |||||||||||||||||||| |||||    
T  28537427 gttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 28537471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 42741844 - 42741790
Alignment:
Q  336 ccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgattta 390  Q
    ||||||||||||| |||||||| ||  ||||||||||| || |||||||||||||    
T  42741844 ccataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 24172237 - 24172282
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 305  Q
    |||||| ||||||||||| |||| | ||||||||||||||||||||    
T  24172237 gtcctgggttcgaatccaaccttgggcatgcaacaacgttaaaact 24172282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 8878199 - 8878136
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 330  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||| || |||||| |||||||    
T  8878199 gttcgaatccagctttaggcatgcaacaacgttaaaactcttaggaagagtttacctctcattt 8878136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 391
Target Start/End: Complemental strand, 4125176 - 4125004
Alignment:
Q  222 acttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatt 318  Q
    ||||||||||||||  |||| ||| |||||||   || || |||||| ||||||||| |||||| | |||||| ||  ||||||||| |||||  ||       
T  4125176 acttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagagcc 4125077  T
Q  319 taccgctcatttaggtcccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttac 391  Q
    | |||| ||||| ||||||| ||| ||||| |||||| | ||| ||||||||||| || ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttac 4125004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 15682959 - 15683056
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaat 357  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||  ||   | |||| ||||||||||||| ||| ||||| ||||||||    
T  15682959 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaat 15683056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 30936034 - 30936085
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||    
T  30936034 gtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagg 30936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 27121899 - 27121809
Alignment:
Q  225 tagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 312  Q
    |||||||||| |||||| ||| |||||||   || ||||| ||| ||||||||||||| |||  |||||||||  ||||||||||||||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttagga 27121809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 391
Target Start/End: Complemental strand, 13468856 - 13468725
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| |||||||||||||||| | |||| | || |||||||||| ||||   || | | |||| |||||  |||||| ||| |||||||||||| | |    
T  13468856 gtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtct 13468757  T
Q  360 cctcagttgcgcgctgaagatacccgatttac 391  Q
    || ||||||||| | || |||||||| |||||    
T  13468756 ccgcagttgcgcacggaggatacccggtttac 13468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 8034222 - 8034189
Alignment:
Q  278 gccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||||||||||||||||||||||| |||||    
T  8034222 gccttagacatgcaacaacgttaaaactcttagg 8034189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 36994611 - 36994566
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 305  Q
    |||||| |||||||||||||||| |||||||| || ||||||||||    
T  36994611 gtcctgggttcgaatccagccttggacatgcagcagcgttaaaact 36994566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 4321604 - 4321564
Alignment:
Q  271 gaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  4321604 gaatccagtcttagacatgcaataacgttaaaactcttagg 4321564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 391
Target Start/End: Complemental strand, 31307218 - 31307046
Alignment:
Q  222 acttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatt 318  Q
    ||||||||||||||  |||| ||| |||||||   || || |||||| |||||||||||||||| | |||||| ||  ||||||||| |||||  ||       
T  31307218 acttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcc 31307119  T
Q  319 taccgctcatttaggtcccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccgatttac 391  Q
    | |||| ||||| ||||||| ||| ||||| |||||| | ||| ||||||||||| || |||||||| |||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttac 31307046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 38766119 - 38766249
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| ||| |||||||||||| | |||||| || |||||||||| |||||  || | | |||| ||||| |||| || ||| ||||| |||||| | |    
T  38766119 gtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtct 38766218  T
Q  360 cctcagttgcgcgctgaagatacccgattta 390  Q
    || ||||||||||| || |||||||||||||    
T  38766219 ccgcagttgcgcgcggaggatacccgattta 38766249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 391
Target Start/End: Complemental strand, 51626414 - 51626286
Alignment:
Q  263 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcct 362  Q
    |||||||||||||||||||| | |||||| ||  |||||||||||||||  || | | |||  ||||| ||||||| | | |||||  ||||| | |||     
T  51626414 ctgagttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccg 51626315  T
Q  363 cagttgcgcgctgaagatacccgatttac 391  Q
    ||||||||||| || ||||||||||||||    
T  51626314 cagttgcgcgcggaggatacccgatttac 51626286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 2434596 - 2434665
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 336  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| ||  | |||  |||||||||||||||    
T  2434596 gttcgaatccagccttggacatacaacaacgttaaaactcttacgaaaagtttgtcgctcatttaggtcc 2434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 385
Target Start/End: Original strand, 14854595 - 14854760
Alignment:
Q  223 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 319  Q
    |||||||||||||  |||| ||| |||||||   || || || ||| |||||||||||||||| | |||||| || |||||||||| |||||  ||  ||    
T  14854595 cttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagctt 14854694  T
Q  320 accgctcatttaggtcccataatactcgaaggattaatttcctcagttgcgcgctgaagatacccg 385  Q
     |||| ||||| ||||| | ||| ||||| |||||| | ||  ||||||||||| || ||||||||    
T  14854695 gccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacccg 14854760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 45994560 - 45994603
Alignment:
Q  268 ttcgaatccagccttagacatgcaacaacgttaaaacttttagg 311  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  45994560 ttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 45994603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 46016179 - 46016310
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| |||||||||||||||| | |||||| ||  ||||||||| |||||  ||   | |||| ||||| ||||||| ||| ||||||| |||| | |    
T  46016179 gtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtct 46016278  T
Q  360 cctcagttgcgcgctgaagatacccgatttac 391  Q
    ||  |||||||||  || ||||||||||||||    
T  46016279 ccgtagttgcgcgtggaggatacccgatttac 46016310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 9012300 - 9012430
Alignment:
Q  260 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaattt 359  Q
    |||||| ||||||||| |||||| | |||||| ||  ||| ||||| |||||  ||  || |||| || || ||||||| ||| ||||| |||||| | |    
T  9012300 gtcctgggttcgaatctagccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtct 9012399  T
Q  360 cctcagttgcgcgctgaagatacccgattta 390  Q
    || ||||||||||| || |||||||||||||    
T  9012400 ccgcagttgcgcgcggaggatacccgattta 9012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 309
Target Start/End: Original strand, 24348724 - 24348754
Alignment:
Q  279 ccttagacatgcaacaacgttaaaactttta 309  Q
    |||||||||||||||||||||||||||||||    
T  24348724 ccttagacatgcaacaacgttaaaactttta 24348754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 3649131 - 3649062
Alignment:
Q  286 catgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 355  Q
    |||||||||||||||||||| |||||  || ||| |||||||||| | || || || |||||||||||||    
T  3649131 catgcaacaacgttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggatta 3649062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 3976634 - 3976698
Alignment:
Q  290 caacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatt 354  Q
    ||||||||||||||||||||||  || |||||||| ||||| | ||||| || ||||| ||||||    
T  3976634 caacaacgttaaaacttttagggagattttaccgcccatttggatcccacaagactcgtaggatt 3976698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 38844275 - 38844227
Alignment:
Q  264 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 312  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  38844275 tgagttcgaatccagctttgggcatgcaacagcgttaaaactcttagga 38844227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 47023439 - 47023527
Alignment:
Q  267 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 355  Q
    |||| ||||||| ||||| |||||||||| ||||||||| |||||  || |||  ||  ||||| ||||||| || |||||||||||||    
T  47023439 gttccaatccagacttaggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggatta 47023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1445 times since January 2019
Visitors: 6143