View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_40 (Length: 411)
Name: NF0830_high_40
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_40 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 197 - 407
Target Start/End: Complemental strand, 28817901 - 28817691
Alignment:
| Q |
197 |
gttgaaacatttagaaatacattttgtggaattatatgatcctttaagcaaatataacattcttgcaagaaactgaagtctaatcatgttacctgaattg |
296 |
Q |
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| T |
28817901 |
gttgaaacatttagaaatacattttgtggaattatatgatcctttaagcaaatataacattcttgcaagaaactgaagtctaatcatgttacctgaattg |
28817802 |
T |
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| Q |
297 |
atgttttctgctgattgtctagcatgtcatacaaacagttttaaggatgtggtgataaatgtcgttgttcaagtgacacttcttggcactactttgaaat |
396 |
Q |
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| T |
28817801 |
atgttttctgctgattgtctagcatgtcatacaaacagttttaaggatgtgctgataaatgtcattgttcaagtgacacttcttggcactactttgaaat |
28817702 |
T |
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| Q |
397 |
tcatctcactc |
407 |
Q |
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| T |
28817701 |
tcatgtcactc |
28817691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 19069245 - 19069146
Alignment:
| Q |
5 |
taaccattagatattaattaacggttgagattaagttgctcattaaaaaccatagtgtactaga---tcctttttgcatca-aagaactttcatcttcct |
100 |
Q |
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| T |
19069245 |
taaccattagatattaattaacggttgagatcaaggttgtcattaaaaactacagtgtactggatcttcctttttgcatcagaagcactttcatcttcct |
19069146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 19068519 - 19068586
Alignment:
| Q |
5 |
taaccattagatattaattaacggttgagattaagttgctcattaaaaaccatagtgtactagatcct |
72 |
Q |
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| T |
19068519 |
taaccattagatattagttaacggttgagatcaaggtggtcattaaaaactacagtgtactggatcct |
19068586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 28817963 - 28817929
Alignment:
| Q |
120 |
tctctgctggtaagtccaaattatatatgatataa |
154 |
Q |
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| T |
28817963 |
tctctactggtaagtccaaattatatatgatataa |
28817929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 15897 - 15772
Alignment:
| Q |
1 |
ttaataaccattagatattaattaacggttgagattaagttgctcattaaaaaccatagtgtactagatcctttttgcatcaaagaactttcatcttcct |
100 |
Q |
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| T |
15897 |
ttaataaccattagatattaattaacggttgagattaagttgctcattaaaaactatagtgtactggatcctttttgtatcaaagaactttcatcttcct |
15798 |
T |
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| Q |
101 |
tgctcacttttttcttccgtctctgc |
126 |
Q |
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| T |
15797 |
tgctcacttttttcttccgtctctgc |
15772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13913459 - 13913359
Alignment:
| Q |
1 |
ttaataaccattagatattaattaacggttgagattaagttgctcattaaaaaccatagtgtactagatcct-ttttgcatcaaagaactttcatcttcc |
99 |
Q |
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| T |
13913459 |
ttaataaccattggatattaattaacggttgagattaagttgctcattaaaaactatagtgcaccggatcctcttttgcatcaaagaactttcatcttcc |
13913360 |
T |
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| Q |
100 |
t |
100 |
Q |
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| T |
13913359 |
t |
13913359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15044670 - 15044732
Alignment:
| Q |
1 |
ttaataaccattagatattaattaacggttgagattaagttgctcattaaaaaccatagtgta |
63 |
Q |
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| T |
15044670 |
ttaataaccgttagatgttaattaacgattgagattaagttgctcattaaacactatagtgta |
15044732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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