View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_high_46 (Length: 403)
Name: NF0830_high_46
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 35171919 - 35171529
Alignment:
| Q |
1 |
accgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggatgataatgttcaataaatga-ctactgtatgtatgtaggagagtatctagc |
99 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
35171919 |
accgaaagcacttcaagtattatcacaggttgtggaaagtaaaaaaggatgataatgttaaataaatgaactactgtatgtatgtaggagagtatctagc |
35171820 |
T |
|
| Q |
100 |
agcagcaagactcaaaaacttacaaatagacatgtatatatgttagtatgtagaatattaatacctgtaattgatgcatcatgttttcctgtttgatttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171819 |
agcagcaagactcaaaaacttacaaatagacatgtatatatgttagtatgtagaatattaatacctgtaattgatgcatcatgttttcctgtttgatttc |
35171720 |
T |
|
| Q |
200 |
aatatctgaaagttgattccgaatacatgtcatttcatttgccctttgtaaacaacattgatgtataatttggggacttgattcggtgactgtagaatca |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35171719 |
aatatctgaaagttgattccgaatacaagtcatttcatttgccctttgtaaacaacattgatgtgtaatttggggacttgattcggtgactgtagaatca |
35171620 |
T |
|
| Q |
300 |
gaacttttaggatcctgcatctttatggagtacatttgttcattgcagcttattccttcacctaaccgttggcttctcccatttggcttct |
390 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35171619 |
gaacttttaggatcctgcatctttatggagtcaatttgttcattgcagcttattccttcatctaaccgttggcttctcccatttggcttct |
35171529 |
T |
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